C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cilia and flagella associated protein 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020014 4930485B16Rik 10090 - 10:92775619-93081618 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020200 4930485B16Rik-201 93028470-93081618 protein_coding
  ENSMUST00000067705 4930485B16Rik-002 92897286-92940289 processed_transcript
  ENSMUST00000163209 4930485B16Rik-003 92796753-92836346 nonsense_mediated_decay
  ENSMUST00000164979 4930485B16Rik-202 92917290-92940297 protein_coding
  ENSMUST00000165090 4930485B16Rik-008 93021711-93025117 processed_transcript
  ENSMUST00000168080 4930485B16Rik-004 93061137-93081618 retained_intron
  ENSMUST00000168110 4930485B16Rik-001 92775619-93081618 protein_coding
  ENSMUST00000168617 4930485B16Rik-007 93035419-93081596 protein_coding
  ENSMUST00000170065 4930485B16Rik-005 92972585-93034821 nonsense_mediated_decay
  ENSMUST00000171781 4930485B16Rik-006 93066763-93070251 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020200ENSMUST00000067705ENSMUST00000163209ENSMUST00000164979ENSMUST00000168080ENSMUST00000168110ENSMUST00000168617ENSMUST00000170065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020200 N/A 0.349±0.13 0.011±0.00 N/A 0.189±0.00 N/A N/A 0.099±0.00 0.027±0.01 0.643±0.00 0.053±0.00 1.237±0.75 0.085±0.08 N/A
ENSMUST00000067705 0.026±0.00 N/A N/A N/A 0.048±0.00 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A
ENSMUST00000163209 0.072±0.03 N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A
ENSMUST00000164979 N/A 0.520±0.23 N/A N/A 0.168±0.07 N/A 0.091±0.00 0.146±0.03 0.036±0.00 N/A N/A 1.333±0.36 N/A N/A
ENSMUST00000168080 0.117±0.01 0.548±0.28 0.036±0.01 N/A 0.344±0.22 0.087±0.03 0.034±0.00 0.085±0.05 0.094±0.06 1.881±0.00 N/A 2.615±1.07 0.058±0.03 N/A
ENSMUST00000168110 0.031±0.01 0.074±0.04 0.011±0.00 0.472±0.45 0.060±0.04 0.010±0.00 0.016±0.00 0.029±0.01 0.008±0.00 0.730±0.05 0.036±0.01 0.558±0.24 0.026±0.02 1.794±0.71
ENSMUST00000168617 N/A N/A N/A N/A 0.113±0.00 N/A 0.102±0.00 0.072±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000170065 N/A N/A N/A N/A 0.067±0.00 N/A 0.104±0.00 0.069±0.01 0.021±0.00 N/A N/A 0.711±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UU CIL_0007UU_0002 VISTA 10:92255726-92857808

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078192 C4H12orf55 cilia and flagella associated 54 protein_coding Danio_rerio
ENSG00000188596 C12orf55 cilia and flagella associated 54 protein_coding Homo_sapiens

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