C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3a, subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020211 Sf3a2 10090 + 10:80798198-80804924 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000139461 Sf3a2-003 80802500-80804017 retained_intron
  ENSMUST00000147440 Sf3a2-002 80798969-80802401 protein_coding
  ENSMUST00000148665 Sf3a2-001 80798198-80804924 protein_coding
  ENSMUST00000151928 Sf3a2-004 80798732-80804007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000148665ENSMUST00000151928
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000148665 9.629±1.49 24.485±1.71 13.960±1.92 22.633±10.04 15.365±4.04 11.849±1.56 4.386±1.49 6.513±0.90 11.285±8.95 11.495±1.24 8.399±1.25 22.518±6.32 14.226±6.16 11.423±3.93
ENSMUST00000151928 N/A N/A 11.689±0.00 17.582±0.00 N/A N/A 5.715±0.51 6.784±0.29 23.246±7.59 N/A N/A 15.963±0.00 20.466±13.86 23.786±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T8 CIL_0001T8_0002 CGP 10:80755206-80798626
CIL_0001II CIL_0001II_0002 CGP 10:80796100-80804924
CIL_0001IF CIL_0001IF_0002 CGP 10:80798198-80807648

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021107 sf3a2 splicing factor 3a, subunit 2 protein_coding Danio_rerio
ENSG00000104897 SF3A2 splicing factor 3a, subunit 2, 66kDa protein_coding Homo_sapiens

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