C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3a, subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151928 Sf3a2-004 ENSMUSG00000020211 10090 + 10:80798732-80804007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverOvaryPlacentaTestisENSMUST00000151928
Transcript ID Bladder Brain Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000151928 11.689±0.00 17.582±0.00 5.715±0.51 6.784±0.29 23.246±7.59 15.963±0.00 20.466±13.86 23.786±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T8 CIL_0001T8_0002 CGP 10:80755206-80798626
CIL_0001II CIL_0001II_0002 CGP 10:80796100-80804924
CIL_0001IF CIL_0001IF_0002 CGP 10:80798198-80807648

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221494 SF3A2-001 protein_coding Homo_sapiens 0 697
ENST00000586396 SF3A2-002 protein_coding Homo_sapiens 0 472
ENST00000592314 SF3A2-006 retained_intron Homo_sapiens 0 470
ENST00000592839 SF3A2-003 retained_intron Homo_sapiens 0 405

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