C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3a, subunit 2, 66kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104897 SF3A2 9606 + 19:2236504-2248679 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221494 SF3A2-001 2236504-2248679 protein_coding
  ENST00000586396 SF3A2-002 2237794-2246802 protein_coding
  ENST00000587637 SF3A2-008 2245509-2247206 retained_intron
  ENST00000589118 SF3A2-005 2236832-2245186 retained_intron
  ENST00000590034 SF3A2-004 2243382-2244953 retained_intron
  ENST00000592314 SF3A2-006 2236860-2247878 retained_intron
  ENST00000592839 SF3A2-003 2236853-2245838 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221494ENST00000586396ENST00000592314ENST00000592839
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221494 28.838±0.00 39.469±0.00 N/A 6.305±4.56 17.157±10.26 17.578±12.99 4.502±4.02 19.569±0.00 4.688±3.17 12.907±10.91 22.380±0.00 66.466±26.79 54.154±3.88 93.310±4.56
ENST00000586396 N/A N/A 5.888±0.00 N/A N/A N/A 0.695±0.00 N/A N/A N/A 7.534±0.00 N/A N/A N/A
ENST00000592314 27.035±0.00 47.341±0.00 N/A 19.843±0.00 18.249±0.00 20.094±0.00 N/A N/A 3.547±0.00 N/A 22.079±0.00 N/A N/A N/A
ENST00000592839 N/A N/A N/A N/A N/A N/A N/A 3.376±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T8 CIL_0001T8_0001 CGP 19:2164149-2237704
CIL_0001II CIL_0001II_0001 CGP 19:2230084-2248679
CIL_0001IF CIL_0001IF_0001 CGP 19:2236504-2252073

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000389 TAS mRNA 3'-splice site recognition
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0006397 IMP mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021107 sf3a2 splicing factor 3a, subunit 2 protein_coding Danio_rerio
ENSMUSG00000020211 Sf3a2 splicing factor 3a, subunit 2 protein_coding Mus_musculus

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