C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ and LIM domain 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020388 Pdlim4 10090 - 11:54054928-54069014 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018755 Pdlim4-001 54054928-54069014 protein_coding
  ENSMUST00000093109 Pdlim4-003 54054948-54068932 protein_coding
  ENSMUST00000127271 Pdlim4-002 54058951-54068991 retained_intron
  ENSMUST00000144477 Pdlim4-005 54055920-54064796 protein_coding
  ENSMUST00000151948 Pdlim4-004 54063723-54064568 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018755ENSMUST00000093109ENSMUST00000127271ENSMUST00000144477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018755 58.158±35.99 37.524±4.54 55.074±0.55 9.870±4.32 36.170±7.14 38.143±4.07 18.798±2.08 5.576±0.51 1.709±0.90 9.625±0.78 2.719±0.71 135.292±39.09 12.965±3.75 2.087±0.89
ENSMUST00000093109 N/A N/A N/A N/A 2.624±0.00 N/A N/A N/A N/A N/A 0.645±0.00 28.721±3.62 N/A N/A
ENSMUST00000127271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.297±0.06 5.875±0.34 N/A 0.066±0.00
ENSMUST00000144477 N/A N/A N/A N/A N/A N/A N/A N/A 0.640±0.03 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068973 pdlim4 PDZ and LIM domain 4 protein_coding Danio_rerio
ENSG00000131435 PDLIM4 PDZ and LIM domain 4 protein_coding Homo_sapiens

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