C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ and LIM domain 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131435 PDLIM4 9606 + 5:132257671-132273454 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253754 PDLIM4-001 132257671-132273454 protein_coding
  ENST00000379018 PDLIM4-002 132257707-132272332 protein_coding
  ENST00000418373 PDLIM4-004 132261449-132271336 protein_coding
  ENST00000462597 PDLIM4-006 132270972-132272063 retained_intron
  ENST00000463615 PDLIM4-007 132257696-132266761 retained_intron
  ENST00000474421 PDLIM4-003 132257703-132271873 retained_intron
  ENST00000484620 PDLIM4-005 132270432-132271833 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253754ENST00000379018ENST00000418373ENST00000462597ENST00000463615ENST00000484620
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253754 N/A N/A N/A 0.755±0.00 3.953±0.00 0.260±0.07 1.245±0.00 N/A 1.400±1.24 0.039±0.00 4.405±2.18 1.769±0.24 0.673±0.00
ENST00000379018 6.702±0.00 19.801±0.00 15.606±0.00 21.670±0.00 29.583±0.00 3.430±0.00 6.531±0.00 0.102±0.00 23.933±0.00 2.078±0.00 12.820±8.08 17.945±6.48 8.447±4.40
ENST00000418373 N/A N/A N/A N/A 1.119±0.00 N/A N/A 2.525±0.00 1.040±0.00 N/A 0.887±0.00 N/A N/A
ENST00000462597 2.807±0.00 11.549±0.00 N/A 14.559±0.00 13.838±0.00 N/A N/A N/A 8.294±0.00 0.795±0.00 7.921±0.00 N/A N/A
ENST00000463615 N/A N/A 0.317±0.00 2.090±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484620 N/A N/A N/A N/A N/A N/A N/A 0.500±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093D CIL_00093D_0001 VISTA 5:131965137-132566411
CIL_0007RF CIL_0007RF_0001 VISTA 5:131967147-132570227

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068973 pdlim4 PDZ and LIM domain 4 protein_coding Danio_rerio
ENSMUSG00000020388 Pdlim4 PDZ and LIM domain 4 protein_coding Mus_musculus

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