C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptophysin-like protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020570 Sypl 10090 + 12:32953891-32979050 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020885 Sypl-002 32954184-32976904 protein_coding
  ENSMUST00000076698 Sypl-001 32953891-32979050 protein_coding
  ENSMUST00000122861 Sypl-005 32954247-32974152 nonsense_mediated_decay
  ENSMUST00000129592 Sypl-004 32954559-32967679 processed_transcript
  ENSMUST00000131562 Sypl-003 32965326-32970342 retained_intron
  ENSMUST00000139339 Sypl-006 32965406-32969446 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020885ENSMUST00000076698ENSMUST00000122861ENSMUST00000139339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020885 37.193±2.02 24.677±3.58 63.095±6.10 6.307±3.00 29.085±2.12 47.501±11.11 25.152±1.36 48.728±4.66 14.338±4.00 57.168±2.56 54.445±3.24 24.368±7.55 24.040±17.37 24.946±16.23
ENSMUST00000076698 5.489±1.30 5.385±0.57 11.941±0.11 2.829±0.69 5.967±1.30 8.779±3.07 4.070±0.00 9.039±0.92 3.165±0.35 10.893±1.15 8.693±0.54 5.604±2.48 3.749±2.64 7.252±5.08
ENSMUST00000122861 N/A 21.875±4.34 N/A N/A N/A 41.200±0.00 N/A N/A 13.073±0.00 N/A N/A N/A N/A N/A
ENSMUST00000139339 25.085±3.29 N/A N/A N/A 39.857±24.18 31.818±0.00 N/A 22.287±1.44 9.647±0.26 N/A N/A 12.461±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000321 CIL_000321_0002 CGP 12:32820335-32979050

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0016020 IDA membrane
GO:0030141 IDA secretory granule
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077356 sypl1 synaptophysin-like 1 protein_coding Danio_rerio
ENSG00000008282 SYPL1 synaptophysin-like 1 protein_coding Homo_sapiens

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