C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin-like protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076698 Sypl-001 ENSMUSG00000020570 10090 + 12:32953891-32979050 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076698
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076698 5.489±1.30 5.385±0.57 11.941±0.11 2.829±0.69 5.967±1.30 8.779±3.07 4.070±0.00 9.039±0.92 3.165±0.35 10.893±1.15 8.693±0.54 5.604±2.48 3.749±2.64 7.252±5.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000321 CIL_000321_0002 CGP 12:32820335-32979050

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0016020 IDA membrane
GO:0030141 IDA secretory granule
GO:0030285 IBA integral component of synaptic vesicle membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000011473 SYPL1-001 protein_coding Homo_sapiens 0 1181
ENST00000455385 SYPL1-002 protein_coding Homo_sapiens 0 1151
ENST00000460770 SYPL1-007 retained_intron Homo_sapiens 0 405
ENST00000464029 SYPL1-005 protein_coding Homo_sapiens 0 440
ENST00000470347 SYPL1-004 protein_coding Homo_sapiens 0 599
ENST00000473622 CTD-2501O3.2-001 processed_pseudogene Homo_sapiens 0 235
ENST00000483448 SYPL1-003 retained_intron Homo_sapiens 8e-36 154

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