C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin-like protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020885 Sypl-002 ENSMUSG00000020570 10090 + 12:32954184-32976904 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020885
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020885 37.193±2.02 24.677±3.58 63.095±6.10 6.307±3.00 29.085±2.12 47.501±11.11 25.152±1.36 48.728±4.66 14.338±4.00 57.168±2.56 54.445±3.24 24.368±7.55 24.040±17.37 24.946±16.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000321 CIL_000321_0002 CGP 12:32820335-32979050

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0016020 IDA membrane
GO:0030141 IDA secretory granule
GO:0030285 IBA integral component of synaptic vesicle membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000011473 SYPL1-001 protein_coding Homo_sapiens 0 1149
ENST00000455385 SYPL1-002 protein_coding Homo_sapiens 0 1232
ENST00000460770 SYPL1-007 retained_intron Homo_sapiens 0 405
ENST00000464029 SYPL1-005 protein_coding Homo_sapiens 0 440
ENST00000470347 SYPL1-004 protein_coding Homo_sapiens 0 604
ENST00000473622 CTD-2501O3.2-001 processed_pseudogene Homo_sapiens 0 246
ENST00000483448 SYPL1-003 retained_intron Homo_sapiens 2e-26 122

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