C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sh3 domain YSC-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020669 Sh3yl1 10090 + 12:30911668-30960162 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020997 Sh3yl1-001 30911668-30960162 protein_coding
  ENSMUST00000110880 Sh3yl1-002 30911692-30960151 protein_coding
  ENSMUST00000128814 Sh3yl1-004 30912187-30960156 processed_transcript
  ENSMUST00000142693 Sh3yl1-003 30911668-30960018 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020997ENSMUST00000110880ENSMUST00000128814ENSMUST00000142693
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020997 0.933±0.38 0.323±0.16 6.139±2.58 6.350±0.97 0.408±0.00 1.328±0.00 0.325±0.14 5.484±1.54 6.627±6.73 0.895±0.45 0.314±0.04 1.994±1.28 2.128±1.26 4.412±1.83
ENSMUST00000110880 N/A 0.140±0.08 N/A N/A 0.162±0.00 1.400±0.27 0.407±0.00 N/A 2.204±0.00 0.483±0.00 0.179±0.00 0.342±0.26 1.135±0.66 N/A
ENSMUST00000128814 N/A N/A 2.521±0.29 N/A N/A 1.457±0.00 N/A N/A N/A N/A N/A 1.830±0.05 0.492±0.25 8.191±9.77
ENSMUST00000142693 0.395±0.32 0.250±0.12 1.716±0.41 1.699±0.01 0.627±0.37 3.085±0.84 0.076±0.01 1.576±0.36 2.627±2.15 0.821±0.19 0.044±0.02 0.830±0.35 0.446±0.31 0.967±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006661 IMP phosphatidylinositol biosynthetic process
GO:0019902 ISO phosphatase binding
GO:0032587 IEA ruffle membrane
GO:0035091 IEA phosphatidylinositol binding
GO:1900027 IMP regulation of ruffle assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074393 sh3yl1 SH3 domain containing, Ysc84-like 1 (S. cerevisiae) protein_coding Danio_rerio
ENSG00000035115 SH3YL1 SH3 and SYLF domain containing 1 protein_coding Homo_sapiens

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