C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020705 Ddx42 10090 + 11:106216926-106249139 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021046 Ddx42-001 106216926-106249139 protein_coding
  ENSMUST00000152860 Ddx42-002 106236996-106238824 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021046
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021046 6.804±2.22 10.349±4.83 13.054±2.95 23.466±3.93 7.982±1.10 7.712±0.70 4.126±0.85 6.556±0.36 9.694±6.05 8.788±3.14 6.694±0.43 13.269±7.61 18.561±2.86 11.627±4.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006Q3 CIL_0006Q3_0002 CGP 11:106197408-106249139
CIL_0006Q4 CIL_0006Q4_0002 CGP 11:106216926-106256079

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008104 ISS protein localization
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037928 ddx42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 protein_coding Danio_rerio
ENSG00000198231 DDX42 DEAD (Asp-Glu-Ala-Asp) box helicase 42 protein_coding Homo_sapiens

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