C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021046 Ddx42-001 ENSMUSG00000020705 10090 + 11:106216926-106249139 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021046
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021046 6.804±2.22 10.349±4.83 13.054±2.95 23.466±3.93 7.982±1.10 7.712±0.70 4.126±0.85 6.556±0.36 9.694±6.05 8.788±3.14 6.694±0.43 13.269±7.61 18.561±2.86 11.627±4.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006Q3 CIL_0006Q3_0002 CGP 11:106197408-106249139
CIL_0006Q4 CIL_0006Q4_0002 CGP 11:106216926-106256079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008104 ISS protein localization
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127297 ddx42-001 protein_coding Danio_rerio 0 933
ENSDART00000076209 ddx42-201 protein_coding Danio_rerio 0 861
ENSDART00000151504 ddx42-002 retained_intron Danio_rerio 0.00000003 66
ENST00000359353 DDX42-010 protein_coding Homo_sapiens 0 3282
ENST00000389924 DDX42-201 protein_coding Homo_sapiens 0 3869
ENST00000457800 DDX42-202 protein_coding Homo_sapiens 0 3360
ENST00000577940 DDX42-006 nonsense_mediated_decay Homo_sapiens 0 1890
ENST00000577978 DDX42-015 retained_intron Homo_sapiens 0 228
ENST00000578137 DDX42-012 nonsense_mediated_decay Homo_sapiens 0 918
ENST00000578593 DDX42-005 retained_intron Homo_sapiens 0 1814
ENST00000578681 DDX42-001 protein_coding Homo_sapiens 0 3869
ENST00000579511 DDX42-014 retained_intron Homo_sapiens 0 381
ENST00000579539 DDX42-017 retained_intron Homo_sapiens 0 353
ENST00000580108 DDX42-011 retained_intron Homo_sapiens 0 647
ENST00000581135 DDX42-009 protein_coding Homo_sapiens 0 473
ENST00000581477 DDX42-004 retained_intron Homo_sapiens 0 219
ENST00000581767 DDX42-008 retained_intron Homo_sapiens 0 898
ENST00000583590 DDX42-002 protein_coding Homo_sapiens 0 3869
ENST00000584010 DDX42-003 retained_intron Homo_sapiens 0 2815
ENST00000584261 DDX42-013 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000584951 DDX42-016 retained_intron Homo_sapiens 0 381

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