C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box helicase 42
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198231 DDX42 9606 + 17:63773603-63819317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359353 DDX42-010 63774190-63818398 protein_coding
  ENST00000389924 DDX42-201 63774189-63819316 protein_coding
  ENST00000457800 DDX42-202 63792531-63819246 protein_coding
  ENST00000577940 DDX42-006 63792529-63813290 nonsense_mediated_decay
  ENST00000577978 DDX42-015 63800177-63806542 retained_intron
  ENST00000578137 DDX42-012 63787038-63805287 nonsense_mediated_decay
  ENST00000578593 DDX42-005 63811281-63819247 retained_intron
  ENST00000578681 DDX42-001 63773863-63819317 protein_coding
  ENST00000579511 DDX42-014 63800151-63806556 retained_intron
  ENST00000579539 DDX42-017 63816589-63817886 retained_intron
  ENST00000580108 DDX42-011 63787036-63798196 retained_intron
  ENST00000581135 DDX42-009 63773603-63792504 protein_coding
  ENST00000581477 DDX42-004 63810263-63811271 retained_intron
  ENST00000581767 DDX42-008 63817073-63819316 retained_intron
  ENST00000582985 DDX42-018 63816968-63819099 processed_transcript
  ENST00000583590 DDX42-002 63773884-63819317 protein_coding
  ENST00000584010 DDX42-003 63805508-63819209 retained_intron
  ENST00000584261 DDX42-013 63792486-63806650 nonsense_mediated_decay
  ENST00000584951 DDX42-016 63813272-63815970 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359353ENST00000389924ENST00000457800ENST00000577940ENST00000583590
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359353 N/A N/A N/A N/A N/A 6.455±0.00 N/A N/A N/A N/A N/A 23.072±0.00 28.435±0.00 39.098±0.00
ENST00000389924 20.067±0.00 17.560±0.00 N/A 23.552±0.00 11.643±7.45 6.716±2.10 7.822±6.18 6.375±2.01 5.258±0.89 11.524±0.00 9.535±5.35 18.215±8.91 16.244±3.72 22.707±3.91
ENST00000457800 18.588±0.00 27.391±0.00 N/A 24.292±0.00 20.956±0.00 13.987±0.00 1.900±0.00 15.674±0.00 6.212±0.00 11.653±0.00 7.529±0.00 23.573±1.08 9.650±0.00 28.677±0.00
ENST00000577940 N/A N/A 13.620±0.00 N/A 11.130±0.00 11.226±0.00 N/A N/A 11.916±0.00 17.813±0.00 7.675±0.00 16.533±0.00 N/A N/A
ENST00000583590 N/A N/A N/A 5.328±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q3 CIL_0006Q3_0001 CGP 17:63745250-63819317
CIL_0006Q4 CIL_0006Q4_0001 CGP 17:63773603-63830012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008104 IDA protein localization
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037928 ddx42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 protein_coding Danio_rerio
ENSMUSG00000020705 Ddx42 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 protein_coding Mus_musculus

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