C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fas (TNFRSF6) binding factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020776 Fbf1 10090 - 11:116142285-116168166 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103031 Fbf1-001 116142285-116168153 protein_coding
  ENSMUST00000106435 Fbf1-201 116142286-116165914 protein_coding
  ENSMUST00000124828 Fbf1-003 116155086-116168154 protein_coding
  ENSMUST00000125980 Fbf1-004 116143242-116150795 processed_transcript
  ENSMUST00000126861 Fbf1-005 116142285-116147139 processed_transcript
  ENSMUST00000131521 Fbf1-008 116155977-116165883 processed_transcript
  ENSMUST00000136073 Fbf1-012 116165783-116167765 retained_intron
  ENSMUST00000136318 Fbf1-002 116142285-116167780 processed_transcript
  ENSMUST00000139020 Fbf1-006 116164680-116168148 protein_coding
  ENSMUST00000143038 Fbf1-009 116154750-116158893 processed_transcript
  ENSMUST00000148350 Fbf1-011 116163329-116168166 processed_transcript
  ENSMUST00000150703 Fbf1-010 116154719-116157490 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103031ENSMUST00000106435ENSMUST00000125980ENSMUST00000136318ENSMUST00000143038ENSMUST00000148350
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103031 2.106±0.77 N/A 3.179±0.25 4.195±0.36 1.414±0.00 N/A 0.901±0.03 2.572±0.43 0.706±0.46 2.388±0.00 0.890±0.26 3.003±1.04 2.504±0.67 2.572±0.01
ENSMUST00000106435 3.394±0.68 7.201±2.71 6.529±0.61 13.215±3.28 3.242±0.82 3.399±1.04 1.727±0.35 2.743±0.90 1.249±0.98 6.325±1.64 1.170±0.61 8.712±2.40 3.822±1.76 9.218±1.32
ENSMUST00000125980 N/A N/A N/A N/A N/A 1.649±0.00 N/A N/A 0.638±0.00 N/A N/A 5.294±1.20 1.966±0.00 21.059±0.00
ENSMUST00000136318 N/A N/A N/A N/A 1.138±0.04 0.777±0.06 N/A N/A 0.532±0.24 1.915±0.00 0.614±0.00 2.818±0.44 1.216±0.00 N/A
ENSMUST00000143038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.499±0.00
ENSMUST00000148350 N/A N/A N/A 34.187±0.00 N/A N/A N/A N/A N/A N/A N/A 42.432±0.00 19.916±2.75 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078W CIL_00078W_0002 CGP 11:116142285-116199045

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000922 ISS spindle pole
GO:0005515 IPI protein binding
GO:0005814 IDA:ISS centriole
GO:0042384 ISS cilium assembly
GO:0043296 ISS apical junction complex
GO:0043297 ISS apical junction assembly
GO:0045095 ISS keratin filament
GO:0090162 ISS establishment of epithelial cell polarity
GO:0097539 IEA ciliary transition fiber

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029351 FBF1 (1 of 2) Fas (TNFRSF6) binding factor 1 protein_coding Danio_rerio
ENSDARG00000090482 FBF1 (2 of 2) Fas (TNFRSF6) binding factor 1 protein_coding Danio_rerio
ENSG00000188878 FBF1 Fas (TNFRSF6) binding factor 1 protein_coding Homo_sapiens

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