C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fas (TNFRSF6) binding factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106435 Fbf1-201 ENSMUSG00000020776 10090 - 11:116142286-116165914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106435
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106435 3.394±0.68 7.201±2.71 6.529±0.61 13.215±3.28 3.242±0.82 3.399±1.04 1.727±0.35 2.743±0.90 1.249±0.98 6.325±1.64 1.170±0.61 8.712±2.40 3.822±1.76 9.218±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078W CIL_00078W_0002 CGP 11:116142285-116199045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000922 ISS spindle pole
GO:0005515 IPI protein binding
GO:0005814 IDA:ISS centriole
GO:0042384 ISS cilium assembly
GO:0043296 ISS apical junction complex
GO:0043297 ISS apical junction assembly
GO:0045095 ISS keratin filament
GO:0090162 ISS establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319129 FBF1-201 protein_coding Homo_sapiens 0 1711
ENST00000389570 FBF1-202 protein_coding Homo_sapiens 0 985
ENST00000585990 FBF1-002 retained_intron Homo_sapiens 0 822
ENST00000586717 FBF1-001 protein_coding Homo_sapiens 0 1705
ENST00000588283 FBF1-007 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000590264 FBF1-009 protein_coding Homo_sapiens 1e-19 100
ENST00000592193 FBF1-003 protein_coding Homo_sapiens 0 1725
ENST00000593076 FBF1-006 retained_intron Homo_sapiens 0 219
ENST00000593156 RP11-552F3.12-001 retained_intron Homo_sapiens 0 909

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