C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 13 (sodium-dependent citrate transporter), member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020805 Slc13a5 10090 - 11:72241994-72267222 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021161 Slc13a5-001 72241994-72266602 protein_coding
  ENSMUST00000137701 Slc13a5-002 72261637-72267222 protein_coding
  ENSMUST00000140167 Slc13a5-003 72260332-72266602 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021161ENSMUST00000137701ENSMUST00000140167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021161 0.319±0.32 0.041±0.02 0.028±0.02 0.691±0.44 0.028±0.00 0.052±0.02 0.016±0.01 0.029±0.02 0.444±0.30 0.013±0.00 0.008±0.00 0.216±0.09 0.030±0.02 10.914±4.76
ENSMUST00000137701 N/A 0.138±0.07 N/A N/A N/A N/A 0.130±0.00 0.129±0.00 N/A N/A N/A 0.281±0.07 N/A N/A
ENSMUST00000140167 N/A N/A N/A N/A N/A N/A N/A 0.159±0.01 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033A CIL_00033A_0002 CGP 11:72211724-72267222
CIL_0000HE CIL_0000HE_0002 CGP 11:72241994-72313733

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005343 IEA organic acid:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006842 IDA tricarboxylic acid transport
GO:0015137 IDA citrate transmembrane transporter activity
GO:0015141 IDA succinate transmembrane transporter activity
GO:0015142 IDA tricarboxylic acid transmembrane transporter activity
GO:0015744 IDA succinate transport
GO:0015746 IDA citrate transport
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0035674 IDA tricarboxylic acid transmembrane transport
GO:0071422 IDA succinate transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039999 slc13a5b solute carrier family 13 (sodium-dependent citrate transporter), member 5b protein_coding Danio_rerio
ENSDARG00000077691 slc13a5a info solute carrier family 13 (sodium-dependent citrate transporter), member 5a protein_coding Danio_rerio
ENSG00000141485 SLC13A5 solute carrier family 13 (sodium-dependent citrate transporter), member 5 protein_coding Homo_sapiens

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