C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rabaptin, RAB GTPase binding effector protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076270 Rabep1-001 ENSMUSG00000020817 10090 + 11:70844778-70943105 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000076270
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000076270 5.491±0.00 6.494±0.38 16.160±4.19 4.564±1.15 2.915±0.33 3.654±0.41 3.214±1.14 3.534±0.80 3.717±0.30 5.641±1.20 8.520±4.12 7.848±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0002 CGP 11:70790932-70943105
CIL_00060J CIL_00060J_0003 CGP 11:70844778-70969973

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0006897 IEA endocytosis
GO:0006915 IEA apoptotic process
GO:0008083 IEA growth factor activity
GO:0015031 IEA protein transport
GO:0030139 ISS endocytic vesicle
GO:0042803 IEA protein homodimerization activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341923 RABEP1-002 protein_coding Homo_sapiens 0 3025
ENST00000537505 RABEP1-001 protein_coding Homo_sapiens 0 4037
ENST00000570487 RABEP1-005 protein_coding Homo_sapiens 0 374
ENST00000572250 RABEP1-007 protein_coding Homo_sapiens 0 457
ENST00000573169 NUP88-014 processed_transcript Homo_sapiens 0 628
ENST00000574568 RABEP1-006 protein_coding Homo_sapiens 0 571
ENST00000575475 RABEP1-003 retained_intron Homo_sapiens 0 2754
ENST00000575991 RABEP1-004 protein_coding Homo_sapiens 0 322

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