C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LUC7-like 3 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020863 Luc7l3 10090 - 11:94287890-94321988 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021226 Luc7l3-001 94291139-94321988 protein_coding
  ENSMUST00000107820 Luc7l3-003 94291139-94321988 protein_coding
  ENSMUST00000107821 Luc7l3-002 94291061-94321988 protein_coding
  ENSMUST00000107822 Luc7l3-009 94292774-94321895 nonsense_mediated_decay
  ENSMUST00000132623 Luc7l3-010 94291061-94297067 protein_coding
  ENSMUST00000135311 Luc7l3-006 94297015-94299031 processed_transcript
  ENSMUST00000138369 Luc7l3-005 94291329-94293223 nonsense_mediated_decay
  ENSMUST00000165620 Luc7l3-008 94297056-94300231 retained_intron
  ENSMUST00000166312 Luc7l3-004 94287890-94321958 protein_coding
  ENSMUST00000171033 Luc7l3-007 94297007-94298218 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021226ENSMUST00000107820ENSMUST00000107821ENSMUST00000107822ENSMUST00000132623ENSMUST00000135311ENSMUST00000166312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021226 2.753±0.00 4.368±2.41 8.428±1.15 21.380±4.27 N/A 1.852±0.00 N/A 1.575±0.54 1.331±0.16 2.552±0.00 3.887±0.84 4.181±2.59 5.557±1.92 1.521±0.00
ENSMUST00000107820 8.552±2.86 4.945±1.56 26.162±4.91 23.244±8.78 9.995±1.79 6.370±1.11 4.862±0.17 4.546±0.89 12.549±9.69 12.134±1.32 5.096±1.01 11.683±7.10 9.294±2.49 6.520±0.74
ENSMUST00000107821 N/A 3.701±0.92 N/A 26.040±0.00 N/A N/A N/A N/A 11.689±7.34 N/A 5.022±1.48 23.128±9.06 18.240±18.48 N/A
ENSMUST00000107822 N/A N/A N/A 73.263±0.00 N/A N/A N/A N/A N/A N/A N/A 112.213±0.00 47.220±21.91 87.376±0.00
ENSMUST00000132623 N/A N/A N/A 83.630±0.00 N/A N/A N/A N/A N/A N/A N/A 106.046±0.00 62.291±13.68 22.609±0.00
ENSMUST00000135311 N/A N/A N/A 376.205±0.00 N/A N/A N/A N/A N/A N/A N/A 545.528±0.00 396.516±186.60 338.850±0.00
ENSMUST00000166312 N/A 1.232±0.23 4.858±0.54 N/A 0.949±0.00 1.436±0.40 N/A N/A 4.468±2.56 4.643±0.00 0.972±0.02 1.932±0.96 2.680±0.83 0.993±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KM CIL_0007KM_0002 UCNEbase 11:94215003-94293118

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005685 IEA U1 snRNP
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006376 IEA mRNA splice site selection
GO:0008380 ISS RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014366 luc7l3 LUC7-like 3 (S. cerevisiae) protein_coding Danio_rerio
ENSG00000108848 LUC7L3 LUC7-like 3 (S. cerevisiae) protein_coding Homo_sapiens

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