C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LUC7-like 3 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021226 Luc7l3-001 ENSMUSG00000020863 10090 - 11:94291139-94321988 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021226
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021226 2.753±0.00 4.368±2.41 8.428±1.15 21.380±4.27 1.852±0.00 1.575±0.54 1.331±0.16 2.552±0.00 3.887±0.84 4.181±2.59 5.557±1.92 1.521±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KM CIL_0007KM_0002 UCNEbase 11:94215003-94293118

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005685 IEA U1 snRNP
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006376 IEA mRNA splice site selection
GO:0008380 ISS RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000108869 luc7l3-201 protein_coding Danio_rerio 0 307
ENSDART00000101253 luc7l3-001 protein_coding Danio_rerio 0 307
ENST00000240304 LUC7L3-002 protein_coding Homo_sapiens 0 1897
ENST00000393227 LUC7L3-004 protein_coding Homo_sapiens 0 3291
ENST00000503728 LUC7L3-026 protein_coding Homo_sapiens 0 564
ENST00000503798 LUC7L3-028 processed_transcript Homo_sapiens 0 538
ENST00000504065 LUC7L3-019 nonsense_mediated_decay Homo_sapiens 0 856
ENST00000504563 LUC7L3-009 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000505619 LUC7L3-011 protein_coding Homo_sapiens 0 464
ENST00000505658 LUC7L3-001 protein_coding Homo_sapiens 0 2385
ENST00000506686 LUC7L3-007 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000507200 LUC7L3-013 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000507503 LUC7L3-015 retained_intron Homo_sapiens 0 712
ENST00000508045 LUC7L3-003 nonsense_mediated_decay Homo_sapiens 0 721
ENST00000508218 LUC7L3-006 retained_intron Homo_sapiens 0 586
ENST00000508482 LUC7L3-005 nonsense_mediated_decay Homo_sapiens 0 1906
ENST00000509335 LUC7L3-008 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000509487 LUC7L3-020 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000510984 LUC7L3-012 protein_coding Homo_sapiens 0 353
ENST00000511974 LUC7L3-021 protein_coding Homo_sapiens 0 425
ENST00000513025 LUC7L3-025 protein_coding Homo_sapiens 0 398
ENST00000513969 LUC7L3-022 protein_coding Homo_sapiens 0 568

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