C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LUC7-like 3 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166312 Luc7l3-004 ENSMUSG00000020863 10090 - 11:94287890-94321958 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000166312
Transcript ID Adrenal Bladder Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166312 1.232±0.23 4.858±0.54 0.949±0.00 1.436±0.40 4.468±2.56 4.643±0.00 0.972±0.02 1.932±0.96 2.680±0.83 0.993±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KM CIL_0007KM_0002 UCNEbase 11:94215003-94293118

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003729 ISS mRNA binding
GO:0005634 ISS nucleus
GO:0005685 IEA U1 snRNP
GO:0006376 IEA mRNA splice site selection
GO:0008380 ISS RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000108869 luc7l3-201 protein_coding Danio_rerio 0 307
ENSDART00000101253 luc7l3-001 protein_coding Danio_rerio 0 307
ENST00000240304 LUC7L3-002 protein_coding Homo_sapiens 0 1897
ENST00000393227 LUC7L3-004 protein_coding Homo_sapiens 0 2093
ENST00000503728 LUC7L3-026 protein_coding Homo_sapiens 0 564
ENST00000503798 LUC7L3-028 processed_transcript Homo_sapiens 0 473
ENST00000504065 LUC7L3-019 nonsense_mediated_decay Homo_sapiens 0 856
ENST00000504563 LUC7L3-009 nonsense_mediated_decay Homo_sapiens 0 483
ENST00000505619 LUC7L3-011 protein_coding Homo_sapiens 0 464
ENST00000505658 LUC7L3-001 protein_coding Homo_sapiens 0 1929
ENST00000506686 LUC7L3-007 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000507200 LUC7L3-013 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000507503 LUC7L3-015 retained_intron Homo_sapiens 0 712
ENST00000508045 LUC7L3-003 nonsense_mediated_decay Homo_sapiens 0 721
ENST00000508218 LUC7L3-006 retained_intron Homo_sapiens 0 586
ENST00000508482 LUC7L3-005 nonsense_mediated_decay Homo_sapiens 0 1670
ENST00000509335 LUC7L3-008 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000509487 LUC7L3-020 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000510984 LUC7L3-012 protein_coding Homo_sapiens 0 353
ENST00000511974 LUC7L3-021 protein_coding Homo_sapiens 0 200
ENST00000513025 LUC7L3-025 protein_coding Homo_sapiens 0 398
ENST00000513969 LUC7L3-022 protein_coding Homo_sapiens 0 665

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