| Source ID |
Type |
Tax ID |
Position |
| LUC7L3 |
UCNEbase |
7955 |
3:17914558-17915083  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007KM_0004 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KM_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KM_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000108848' => 'LUC7-like 3 (S. cerevisiae)',
'ENSG00000141232' => 'transducer of ERBB2, 1',
'ENSG00000167117' => 'long intergenic non-protein coding RNA 483',
'ENSG00000173714' => 'WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2',
'ENSG00000243521' => 'ribosomal protein L5 pseudogene 33',
'ENSG00000248702' => null,
'ENSG00000261976' => null,
'ENSG00000278672' => 'microRNA 8059',
'ENSMUSG00000020863' => 'LUC7-like 3 (S. cerevisiae)',
'ENSMUSG00000037573' => 'transducer of ErbB-2.1',
'ENSMUSG00000044177' => 'WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2',
'ENSMUSG00000094091' => 'predicted gene, 21885'
),
'gene_name_arr' => array(
'ENSG00000108848' => 'LUC7L3',
'ENSG00000141232' => 'TOB1',
'ENSG00000167117' => 'LINC00483',
'ENSG00000173714' => 'WFIKKN2',
'ENSG00000243521' => 'RPL5P33',
'ENSG00000248702' => 'RP11-294J22.5',
'ENSG00000261976' => 'RP11-506D12.5',
'ENSG00000278672' => 'MIR8059',
'ENSMUSG00000020863' => 'Luc7l3',
'ENSMUSG00000037573' => 'Tob1',
'ENSMUSG00000044177' => 'Wfikkn2',
'ENSMUSG00000094091' => 'Gm21885'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 32 => 'Bladder',
(int) 41 => 'Brain',
(int) 62 => 'Breast',
(int) 78 => 'Colon',
(int) 96 => 'Heart',
(int) 110 => 'Kidney',
(int) 124 => 'Liver',
(int) 142 => 'Lung',
(int) 159 => 'Muscle',
(int) 174 => 'Ovary',
(int) 196 => 'Placenta',
(int) 216 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 50,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000240304' => array(
'start' => '50719603',
'end' => '50752709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-002'
),
'ENST00000393227' => array(
'start' => '50719599',
'end' => '50751617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-004'
),
'ENST00000503728' => array(
'start' => '50746619',
'end' => '50752585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-026'
),
'ENST00000503798' => array(
'start' => '50751051',
'end' => '50752550',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LUC7L3-028'
),
'ENST00000504065' => array(
'start' => '50744661',
'end' => '50750847',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-019'
),
'ENST00000504563' => array(
'start' => '50719599',
'end' => '50743792',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-009'
),
'ENST00000505619' => array(
'start' => '50719629',
'end' => '50741712',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-011'
),
'ENST00000505658' => array(
'start' => '50719544',
'end' => '50756213',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-001'
),
'ENST00000506686' => array(
'start' => '50719598',
'end' => '50738196',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-007'
),
'ENST00000507200' => array(
'start' => '50719802',
'end' => '50743799',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-013'
),
'ENST00000507503' => array(
'start' => '50740267',
'end' => '50744808',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-015'
),
'ENST00000508045' => array(
'start' => '50719570',
'end' => '50744813',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-003'
),
'ENST00000508218' => array(
'start' => '50719597',
'end' => '50741292',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-006'
),
'ENST00000508482' => array(
'start' => '50719629',
'end' => '50751004',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-005'
),
'ENST00000509335' => array(
'start' => '50719598',
'end' => '50741149',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-008'
),
'ENST00000509487' => array(
'start' => '50745906',
'end' => '50751013',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-020'
),
'ENST00000510984' => array(
'start' => '50719647',
'end' => '50741232',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-012'
),
'ENST00000511068' => array(
'start' => '50743672',
'end' => '50744789',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-018'
),
'ENST00000511974' => array(
'start' => '50746575',
'end' => '50751569',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-021'
),
'ENST00000512549' => array(
'start' => '50748389',
'end' => '50750550',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LUC7L3-027'
),
'ENST00000513025' => array(
'start' => '50736635',
'end' => '50741673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-025'
),
'ENST00000513969' => array(
'start' => '50746614',
'end' => '50752282',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-022'
),
'ENST00000268957' => array(
'start' => '50862980',
'end' => '50867978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TOB1-002'
),
'ENST00000499247' => array(
'start' => '50862223',
'end' => '50866345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TOB1-001'
),
'ENST00000509385' => array(
'start' => '50863369',
'end' => '50866354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TOB1-003'
),
'ENST00000300458' => array(
'start' => '50761029',
'end' => '50767518',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC00483-001'
),
'ENST00000419688' => array(
'start' => '50764779',
'end' => '50767517',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-002'
),
'ENST00000450727' => array(
'start' => '50761174',
'end' => '50767516',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-003'
),
'ENST00000502517' => array(
'start' => '50762851',
'end' => '50767557',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-004'
),
'ENST00000576150' => array(
'start' => '50766559',
'end' => '50767518',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC00483-006'
),
'ENST00000311378' => array(
'start' => '50835410',
'end' => '50842348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WFIKKN2-001'
),
'ENST00000426127' => array(
'start' => '50834650',
'end' => '50841308',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WFIKKN2-002'
),
'ENST00000487833' => array(
'start' => '50847950',
'end' => '50849270',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL5P33-001'
),
'ENST00000510589' => array(
'start' => '50797366',
'end' => '50797651',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-294J22.5-001'
),
'ENST00000572491' => array(
'start' => '50840057',
'end' => '50841626',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-506D12.5-001'
),
'ENST00000620427' => array(
'start' => '50768650',
'end' => '50768730',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR8059-201'
),
'ENSMUST00000021226' => array(
'start' => '94291139',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-001'
),
'ENSMUST00000107820' => array(
'start' => '94291139',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-003'
),
'ENSMUST00000107821' => array(
'start' => '94291061',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-002'
),
'ENSMUST00000107822' => array(
'start' => '94292774',
'end' => '94321895',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Luc7l3-009'
),
'ENSMUST00000132623' => array(
'start' => '94291061',
'end' => '94297067',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-010'
),
'ENSMUST00000135311' => array(
'start' => '94297015',
'end' => '94299031',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Luc7l3-006'
),
'ENSMUST00000138369' => array(
'start' => '94291329',
'end' => '94293223',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Luc7l3-005'
),
'ENSMUST00000165620' => array(
'start' => '94297056',
'end' => '94300231',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Luc7l3-008'
),
'ENSMUST00000166312' => array(
'start' => '94287890',
'end' => '94321958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-004'
),
'ENSMUST00000171033' => array(
'start' => '94297007',
'end' => '94298218',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Luc7l3-007'
),
'ENSMUST00000041589' => array(
'start' => '94211454',
'end' => '94215495',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tob1-001'
),
'ENSMUST00000061469' => array(
'start' => '94235956',
'end' => '94242707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wfikkn2-001'
),
'ENSMUST00000131352' => array(
'start' => '94242447',
'end' => '94246005',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wfikkn2-002'
),
'ENSMUST00000178891' => array(
'start' => '94284652',
'end' => '94285985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm21885-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KM_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KM_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KM_0001' => array(
'genes_in_region' => array(
'ENSG00000108848' => array(
[maximum depth reached]
),
'ENSG00000141232' => array(
[maximum depth reached]
),
'ENSG00000167117' => array(
[maximum depth reached]
),
'ENSG00000173714' => array(
[maximum depth reached]
),
'ENSG00000243521' => array(
[maximum depth reached]
),
'ENSG00000261976' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Bladder',
(int) 45 => 'Heart',
(int) 46 => 'Liver',
(int) 47 => 'Lung',
(int) 48 => 'Muscle',
(int) 49 => 'Muscle',
(int) 50 => 'Muscle',
(int) 51 => 'Adipose',
(int) 52 => 'Adrenal',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Bladder',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Liver',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Adipose',
(int) 71 => 'Brain',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Brain',
(int) 85 => 'Breast',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Liver',
(int) 90 => 'Lung',
(int) 91 => 'Muscle',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Adrenal',
(int) 97 => 'Brain',
(int) 98 => 'Heart',
(int) 99 => 'Kidney',
(int) 100 => 'Liver',
(int) 101 => 'Lung',
(int) 102 => 'Ovary',
(int) 103 => 'Testis',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Ovary',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Brain',
(int) 113 => 'Breast',
(int) 114 => 'Colon',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Lung',
(int) 119 => 'Muscle',
(int) 120 => 'Ovary',
(int) 121 => 'Testis',
(int) 122 => 'Breast',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Kidney',
(int) 130 => 'Lung',
(int) 131 => 'Ovary',
(int) 132 => 'Placenta',
(int) 133 => 'Testis',
(int) 134 => 'Colon',
(int) 135 => 'Liver',
(int) 136 => 'Placenta',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Ovary',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Kidney',
(int) 149 => 'Lung'
)
),
'CIL_0007KM_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000020863' => array(
[maximum depth reached]
),
'ENSMUSG00000037573' => array(
[maximum depth reached]
),
'ENSMUSG00000044177' => array(
[maximum depth reached]
),
'ENSMUSG00000094091' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Brain',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Brain',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Adrenal',
(int) 70 => 'Bladder',
(int) 71 => 'Brain',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Brain',
(int) 83 => 'Colon',
(int) 84 => 'Liver',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000108848' => 'LUC7-like 3 (S. cerevisiae)',
'ENSG00000141232' => 'transducer of ERBB2, 1',
'ENSG00000167117' => 'long intergenic non-protein coding RNA 483',
'ENSG00000173714' => 'WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2',
'ENSG00000243521' => 'ribosomal protein L5 pseudogene 33',
'ENSG00000248702' => null,
'ENSG00000261976' => null,
'ENSG00000278672' => 'microRNA 8059',
'ENSMUSG00000020863' => 'LUC7-like 3 (S. cerevisiae)',
'ENSMUSG00000037573' => 'transducer of ErbB-2.1',
'ENSMUSG00000044177' => 'WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2',
'ENSMUSG00000094091' => 'predicted gene, 21885'
)
$gene_name_arr = array(
'ENSG00000108848' => 'LUC7L3',
'ENSG00000141232' => 'TOB1',
'ENSG00000167117' => 'LINC00483',
'ENSG00000173714' => 'WFIKKN2',
'ENSG00000243521' => 'RPL5P33',
'ENSG00000248702' => 'RP11-294J22.5',
'ENSG00000261976' => 'RP11-506D12.5',
'ENSG00000278672' => 'MIR8059',
'ENSMUSG00000020863' => 'Luc7l3',
'ENSMUSG00000037573' => 'Tob1',
'ENSMUSG00000044177' => 'Wfikkn2',
'ENSMUSG00000094091' => 'Gm21885'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0001',
'tax_id' => '9606',
'chromosome' => '17',
'seq_start' => '50750455',
'seq_end' => '50862724',
'region_length' => '112269',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '94215003',
'seq_end' => '94293118',
'region_length' => '78115',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0003',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '1044320',
'seq_end' => '1044855',
'region_length' => '535',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0004',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '17914558',
'seq_end' => '17915083',
'region_length' => '525',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0005',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '59675317',
'seq_end' => '59676030',
'region_length' => '713',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 32 => 'Bladder',
(int) 41 => 'Brain',
(int) 62 => 'Breast',
(int) 78 => 'Colon',
(int) 96 => 'Heart',
(int) 110 => 'Kidney',
(int) 124 => 'Liver',
(int) 142 => 'Lung',
(int) 159 => 'Muscle',
(int) 174 => 'Ovary',
(int) 196 => 'Placenta',
(int) 216 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 50
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000240304' => array(
'start' => '50719603',
'end' => '50752709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-002'
),
'ENST00000393227' => array(
'start' => '50719599',
'end' => '50751617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-004'
),
'ENST00000503728' => array(
'start' => '50746619',
'end' => '50752585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-026'
),
'ENST00000503798' => array(
'start' => '50751051',
'end' => '50752550',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LUC7L3-028'
),
'ENST00000504065' => array(
'start' => '50744661',
'end' => '50750847',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-019'
),
'ENST00000504563' => array(
'start' => '50719599',
'end' => '50743792',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-009'
),
'ENST00000505619' => array(
'start' => '50719629',
'end' => '50741712',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-011'
),
'ENST00000505658' => array(
'start' => '50719544',
'end' => '50756213',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-001'
),
'ENST00000506686' => array(
'start' => '50719598',
'end' => '50738196',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-007'
),
'ENST00000507200' => array(
'start' => '50719802',
'end' => '50743799',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-013'
),
'ENST00000507503' => array(
'start' => '50740267',
'end' => '50744808',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-015'
),
'ENST00000508045' => array(
'start' => '50719570',
'end' => '50744813',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-003'
),
'ENST00000508218' => array(
'start' => '50719597',
'end' => '50741292',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-006'
),
'ENST00000508482' => array(
'start' => '50719629',
'end' => '50751004',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-005'
),
'ENST00000509335' => array(
'start' => '50719598',
'end' => '50741149',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-008'
),
'ENST00000509487' => array(
'start' => '50745906',
'end' => '50751013',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-020'
),
'ENST00000510984' => array(
'start' => '50719647',
'end' => '50741232',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-012'
),
'ENST00000511068' => array(
'start' => '50743672',
'end' => '50744789',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-018'
),
'ENST00000511974' => array(
'start' => '50746575',
'end' => '50751569',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-021'
),
'ENST00000512549' => array(
'start' => '50748389',
'end' => '50750550',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LUC7L3-027'
),
'ENST00000513025' => array(
'start' => '50736635',
'end' => '50741673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-025'
),
'ENST00000513969' => array(
'start' => '50746614',
'end' => '50752282',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-022'
),
'ENST00000268957' => array(
'start' => '50862980',
'end' => '50867978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TOB1-002'
),
'ENST00000499247' => array(
'start' => '50862223',
'end' => '50866345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TOB1-001'
),
'ENST00000509385' => array(
'start' => '50863369',
'end' => '50866354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TOB1-003'
),
'ENST00000300458' => array(
'start' => '50761029',
'end' => '50767518',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC00483-001'
),
'ENST00000419688' => array(
'start' => '50764779',
'end' => '50767517',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-002'
),
'ENST00000450727' => array(
'start' => '50761174',
'end' => '50767516',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-003'
),
'ENST00000502517' => array(
'start' => '50762851',
'end' => '50767557',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-004'
),
'ENST00000576150' => array(
'start' => '50766559',
'end' => '50767518',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC00483-006'
),
'ENST00000311378' => array(
'start' => '50835410',
'end' => '50842348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WFIKKN2-001'
),
'ENST00000426127' => array(
'start' => '50834650',
'end' => '50841308',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WFIKKN2-002'
),
'ENST00000487833' => array(
'start' => '50847950',
'end' => '50849270',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL5P33-001'
),
'ENST00000510589' => array(
'start' => '50797366',
'end' => '50797651',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-294J22.5-001'
),
'ENST00000572491' => array(
'start' => '50840057',
'end' => '50841626',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-506D12.5-001'
),
'ENST00000620427' => array(
'start' => '50768650',
'end' => '50768730',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR8059-201'
),
'ENSMUST00000021226' => array(
'start' => '94291139',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-001'
),
'ENSMUST00000107820' => array(
'start' => '94291139',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-003'
),
'ENSMUST00000107821' => array(
'start' => '94291061',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-002'
),
'ENSMUST00000107822' => array(
'start' => '94292774',
'end' => '94321895',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Luc7l3-009'
),
'ENSMUST00000132623' => array(
'start' => '94291061',
'end' => '94297067',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-010'
),
'ENSMUST00000135311' => array(
'start' => '94297015',
'end' => '94299031',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Luc7l3-006'
),
'ENSMUST00000138369' => array(
'start' => '94291329',
'end' => '94293223',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Luc7l3-005'
),
'ENSMUST00000165620' => array(
'start' => '94297056',
'end' => '94300231',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Luc7l3-008'
),
'ENSMUST00000166312' => array(
'start' => '94287890',
'end' => '94321958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-004'
),
'ENSMUST00000171033' => array(
'start' => '94297007',
'end' => '94298218',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Luc7l3-007'
),
'ENSMUST00000041589' => array(
'start' => '94211454',
'end' => '94215495',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tob1-001'
),
'ENSMUST00000061469' => array(
'start' => '94235956',
'end' => '94242707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wfikkn2-001'
),
'ENSMUST00000131352' => array(
'start' => '94242447',
'end' => '94246005',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wfikkn2-002'
),
'ENSMUST00000178891' => array(
'start' => '94284652',
'end' => '94285985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm21885-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KM_0001' => array(
'genes_in_region' => array(
'ENSG00000108848' => array(
[maximum depth reached]
),
'ENSG00000141232' => array(
[maximum depth reached]
),
'ENSG00000167117' => array(
[maximum depth reached]
),
'ENSG00000173714' => array(
[maximum depth reached]
),
'ENSG00000243521' => array(
[maximum depth reached]
),
'ENSG00000261976' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Bladder',
(int) 45 => 'Heart',
(int) 46 => 'Liver',
(int) 47 => 'Lung',
(int) 48 => 'Muscle',
(int) 49 => 'Muscle',
(int) 50 => 'Muscle',
(int) 51 => 'Adipose',
(int) 52 => 'Adrenal',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Bladder',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Liver',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Adipose',
(int) 71 => 'Brain',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Brain',
(int) 85 => 'Breast',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Liver',
(int) 90 => 'Lung',
(int) 91 => 'Muscle',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Adrenal',
(int) 97 => 'Brain',
(int) 98 => 'Heart',
(int) 99 => 'Kidney',
(int) 100 => 'Liver',
(int) 101 => 'Lung',
(int) 102 => 'Ovary',
(int) 103 => 'Testis',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Ovary',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Brain',
(int) 113 => 'Breast',
(int) 114 => 'Colon',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Lung',
(int) 119 => 'Muscle',
(int) 120 => 'Ovary',
(int) 121 => 'Testis',
(int) 122 => 'Breast',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Kidney',
(int) 130 => 'Lung',
(int) 131 => 'Ovary',
(int) 132 => 'Placenta',
(int) 133 => 'Testis',
(int) 134 => 'Colon',
(int) 135 => 'Liver',
(int) 136 => 'Placenta',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Ovary',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Kidney',
(int) 149 => 'Lung'
)
),
'CIL_0007KM_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000020863' => array(
[maximum depth reached]
),
'ENSMUSG00000037573' => array(
[maximum depth reached]
),
'ENSMUSG00000044177' => array(
[maximum depth reached]
),
'ENSMUSG00000094091' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Brain',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Brain',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Adrenal',
(int) 70 => 'Bladder',
(int) 71 => 'Brain',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Brain',
(int) 83 => 'Colon',
(int) 84 => 'Liver',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0004',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '17914558',
'seq_end' => '17915083',
'region_length' => '525',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
)
$gene_el = array(
'ENSMUST00000178891' => array(
'Brain' => array(
'average_FPKM' => '0.054',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '2.666',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.18'
),
'Ovary' => array(
'average_FPKM' => '0.166',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.408',
'stddev_FPKM' => '0.20'
),
'Testis' => array(
'average_FPKM' => '0.233',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000094091'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.054',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '2.666',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.18'
),
'Ovary' => array(
'average_FPKM' => '0.166',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.408',
'stddev_FPKM' => '0.20'
),
'Testis' => array(
'average_FPKM' => '0.233',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000178891'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KM_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KM_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000108848' => 'LUC7-like 3 (S. cerevisiae)',
'ENSG00000141232' => 'transducer of ERBB2, 1',
'ENSG00000167117' => 'long intergenic non-protein coding RNA 483',
'ENSG00000173714' => 'WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2',
'ENSG00000243521' => 'ribosomal protein L5 pseudogene 33',
'ENSG00000248702' => null,
'ENSG00000261976' => null,
'ENSG00000278672' => 'microRNA 8059',
'ENSMUSG00000020863' => 'LUC7-like 3 (S. cerevisiae)',
'ENSMUSG00000037573' => 'transducer of ErbB-2.1',
'ENSMUSG00000044177' => 'WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2',
'ENSMUSG00000094091' => 'predicted gene, 21885'
),
'gene_name_arr' => array(
'ENSG00000108848' => 'LUC7L3',
'ENSG00000141232' => 'TOB1',
'ENSG00000167117' => 'LINC00483',
'ENSG00000173714' => 'WFIKKN2',
'ENSG00000243521' => 'RPL5P33',
'ENSG00000248702' => 'RP11-294J22.5',
'ENSG00000261976' => 'RP11-506D12.5',
'ENSG00000278672' => 'MIR8059',
'ENSMUSG00000020863' => 'Luc7l3',
'ENSMUSG00000037573' => 'Tob1',
'ENSMUSG00000044177' => 'Wfikkn2',
'ENSMUSG00000094091' => 'Gm21885'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 32 => 'Bladder',
(int) 41 => 'Brain',
(int) 62 => 'Breast',
(int) 78 => 'Colon',
(int) 96 => 'Heart',
(int) 110 => 'Kidney',
(int) 124 => 'Liver',
(int) 142 => 'Lung',
(int) 159 => 'Muscle',
(int) 174 => 'Ovary',
(int) 196 => 'Placenta',
(int) 216 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 50,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000240304' => array(
'start' => '50719603',
'end' => '50752709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-002'
),
'ENST00000393227' => array(
'start' => '50719599',
'end' => '50751617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-004'
),
'ENST00000503728' => array(
'start' => '50746619',
'end' => '50752585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-026'
),
'ENST00000503798' => array(
'start' => '50751051',
'end' => '50752550',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LUC7L3-028'
),
'ENST00000504065' => array(
'start' => '50744661',
'end' => '50750847',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-019'
),
'ENST00000504563' => array(
'start' => '50719599',
'end' => '50743792',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-009'
),
'ENST00000505619' => array(
'start' => '50719629',
'end' => '50741712',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-011'
),
'ENST00000505658' => array(
'start' => '50719544',
'end' => '50756213',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-001'
),
'ENST00000506686' => array(
'start' => '50719598',
'end' => '50738196',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-007'
),
'ENST00000507200' => array(
'start' => '50719802',
'end' => '50743799',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-013'
),
'ENST00000507503' => array(
'start' => '50740267',
'end' => '50744808',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-015'
),
'ENST00000508045' => array(
'start' => '50719570',
'end' => '50744813',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-003'
),
'ENST00000508218' => array(
'start' => '50719597',
'end' => '50741292',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-006'
),
'ENST00000508482' => array(
'start' => '50719629',
'end' => '50751004',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-005'
),
'ENST00000509335' => array(
'start' => '50719598',
'end' => '50741149',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-008'
),
'ENST00000509487' => array(
'start' => '50745906',
'end' => '50751013',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-020'
),
'ENST00000510984' => array(
'start' => '50719647',
'end' => '50741232',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-012'
),
'ENST00000511068' => array(
'start' => '50743672',
'end' => '50744789',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-018'
),
'ENST00000511974' => array(
'start' => '50746575',
'end' => '50751569',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-021'
),
'ENST00000512549' => array(
'start' => '50748389',
'end' => '50750550',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LUC7L3-027'
),
'ENST00000513025' => array(
'start' => '50736635',
'end' => '50741673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-025'
),
'ENST00000513969' => array(
'start' => '50746614',
'end' => '50752282',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-022'
),
'ENST00000268957' => array(
'start' => '50862980',
'end' => '50867978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TOB1-002'
),
'ENST00000499247' => array(
'start' => '50862223',
'end' => '50866345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TOB1-001'
),
'ENST00000509385' => array(
'start' => '50863369',
'end' => '50866354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TOB1-003'
),
'ENST00000300458' => array(
'start' => '50761029',
'end' => '50767518',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC00483-001'
),
'ENST00000419688' => array(
'start' => '50764779',
'end' => '50767517',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-002'
),
'ENST00000450727' => array(
'start' => '50761174',
'end' => '50767516',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-003'
),
'ENST00000502517' => array(
'start' => '50762851',
'end' => '50767557',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-004'
),
'ENST00000576150' => array(
'start' => '50766559',
'end' => '50767518',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC00483-006'
),
'ENST00000311378' => array(
'start' => '50835410',
'end' => '50842348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WFIKKN2-001'
),
'ENST00000426127' => array(
'start' => '50834650',
'end' => '50841308',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WFIKKN2-002'
),
'ENST00000487833' => array(
'start' => '50847950',
'end' => '50849270',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL5P33-001'
),
'ENST00000510589' => array(
'start' => '50797366',
'end' => '50797651',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-294J22.5-001'
),
'ENST00000572491' => array(
'start' => '50840057',
'end' => '50841626',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-506D12.5-001'
),
'ENST00000620427' => array(
'start' => '50768650',
'end' => '50768730',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR8059-201'
),
'ENSMUST00000021226' => array(
'start' => '94291139',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-001'
),
'ENSMUST00000107820' => array(
'start' => '94291139',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-003'
),
'ENSMUST00000107821' => array(
'start' => '94291061',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-002'
),
'ENSMUST00000107822' => array(
'start' => '94292774',
'end' => '94321895',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Luc7l3-009'
),
'ENSMUST00000132623' => array(
'start' => '94291061',
'end' => '94297067',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-010'
),
'ENSMUST00000135311' => array(
'start' => '94297015',
'end' => '94299031',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Luc7l3-006'
),
'ENSMUST00000138369' => array(
'start' => '94291329',
'end' => '94293223',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Luc7l3-005'
),
'ENSMUST00000165620' => array(
'start' => '94297056',
'end' => '94300231',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Luc7l3-008'
),
'ENSMUST00000166312' => array(
'start' => '94287890',
'end' => '94321958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-004'
),
'ENSMUST00000171033' => array(
'start' => '94297007',
'end' => '94298218',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Luc7l3-007'
),
'ENSMUST00000041589' => array(
'start' => '94211454',
'end' => '94215495',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tob1-001'
),
'ENSMUST00000061469' => array(
'start' => '94235956',
'end' => '94242707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wfikkn2-001'
),
'ENSMUST00000131352' => array(
'start' => '94242447',
'end' => '94246005',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wfikkn2-002'
),
'ENSMUST00000178891' => array(
'start' => '94284652',
'end' => '94285985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm21885-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KM_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KM_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KM_0001' => array(
'genes_in_region' => array(
'ENSG00000108848' => array(
[maximum depth reached]
),
'ENSG00000141232' => array(
[maximum depth reached]
),
'ENSG00000167117' => array(
[maximum depth reached]
),
'ENSG00000173714' => array(
[maximum depth reached]
),
'ENSG00000243521' => array(
[maximum depth reached]
),
'ENSG00000261976' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Bladder',
(int) 45 => 'Heart',
(int) 46 => 'Liver',
(int) 47 => 'Lung',
(int) 48 => 'Muscle',
(int) 49 => 'Muscle',
(int) 50 => 'Muscle',
(int) 51 => 'Adipose',
(int) 52 => 'Adrenal',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Bladder',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Liver',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Adipose',
(int) 71 => 'Brain',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Brain',
(int) 85 => 'Breast',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Liver',
(int) 90 => 'Lung',
(int) 91 => 'Muscle',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Adrenal',
(int) 97 => 'Brain',
(int) 98 => 'Heart',
(int) 99 => 'Kidney',
(int) 100 => 'Liver',
(int) 101 => 'Lung',
(int) 102 => 'Ovary',
(int) 103 => 'Testis',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Ovary',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Brain',
(int) 113 => 'Breast',
(int) 114 => 'Colon',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Lung',
(int) 119 => 'Muscle',
(int) 120 => 'Ovary',
(int) 121 => 'Testis',
(int) 122 => 'Breast',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Kidney',
(int) 130 => 'Lung',
(int) 131 => 'Ovary',
(int) 132 => 'Placenta',
(int) 133 => 'Testis',
(int) 134 => 'Colon',
(int) 135 => 'Liver',
(int) 136 => 'Placenta',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Ovary',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Kidney',
(int) 149 => 'Lung'
)
),
'CIL_0007KM_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000020863' => array(
[maximum depth reached]
),
'ENSMUSG00000037573' => array(
[maximum depth reached]
),
'ENSMUSG00000044177' => array(
[maximum depth reached]
),
'ENSMUSG00000094091' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Brain',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Brain',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Adrenal',
(int) 70 => 'Bladder',
(int) 71 => 'Brain',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Brain',
(int) 83 => 'Colon',
(int) 84 => 'Liver',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000108848' => 'LUC7-like 3 (S. cerevisiae)',
'ENSG00000141232' => 'transducer of ERBB2, 1',
'ENSG00000167117' => 'long intergenic non-protein coding RNA 483',
'ENSG00000173714' => 'WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2',
'ENSG00000243521' => 'ribosomal protein L5 pseudogene 33',
'ENSG00000248702' => null,
'ENSG00000261976' => null,
'ENSG00000278672' => 'microRNA 8059',
'ENSMUSG00000020863' => 'LUC7-like 3 (S. cerevisiae)',
'ENSMUSG00000037573' => 'transducer of ErbB-2.1',
'ENSMUSG00000044177' => 'WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2',
'ENSMUSG00000094091' => 'predicted gene, 21885'
)
$gene_name_arr = array(
'ENSG00000108848' => 'LUC7L3',
'ENSG00000141232' => 'TOB1',
'ENSG00000167117' => 'LINC00483',
'ENSG00000173714' => 'WFIKKN2',
'ENSG00000243521' => 'RPL5P33',
'ENSG00000248702' => 'RP11-294J22.5',
'ENSG00000261976' => 'RP11-506D12.5',
'ENSG00000278672' => 'MIR8059',
'ENSMUSG00000020863' => 'Luc7l3',
'ENSMUSG00000037573' => 'Tob1',
'ENSMUSG00000044177' => 'Wfikkn2',
'ENSMUSG00000094091' => 'Gm21885'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0001',
'tax_id' => '9606',
'chromosome' => '17',
'seq_start' => '50750455',
'seq_end' => '50862724',
'region_length' => '112269',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '94215003',
'seq_end' => '94293118',
'region_length' => '78115',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0003',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '1044320',
'seq_end' => '1044855',
'region_length' => '535',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0004',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '17914558',
'seq_end' => '17915083',
'region_length' => '525',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0005',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '59675317',
'seq_end' => '59676030',
'region_length' => '713',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 16 => 'Adrenal',
(int) 32 => 'Bladder',
(int) 41 => 'Brain',
(int) 62 => 'Breast',
(int) 78 => 'Colon',
(int) 96 => 'Heart',
(int) 110 => 'Kidney',
(int) 124 => 'Liver',
(int) 142 => 'Lung',
(int) 159 => 'Muscle',
(int) 174 => 'Ovary',
(int) 196 => 'Placenta',
(int) 216 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 50
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000240304' => array(
'start' => '50719603',
'end' => '50752709',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-002'
),
'ENST00000393227' => array(
'start' => '50719599',
'end' => '50751617',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-004'
),
'ENST00000503728' => array(
'start' => '50746619',
'end' => '50752585',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-026'
),
'ENST00000503798' => array(
'start' => '50751051',
'end' => '50752550',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LUC7L3-028'
),
'ENST00000504065' => array(
'start' => '50744661',
'end' => '50750847',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-019'
),
'ENST00000504563' => array(
'start' => '50719599',
'end' => '50743792',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-009'
),
'ENST00000505619' => array(
'start' => '50719629',
'end' => '50741712',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-011'
),
'ENST00000505658' => array(
'start' => '50719544',
'end' => '50756213',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-001'
),
'ENST00000506686' => array(
'start' => '50719598',
'end' => '50738196',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-007'
),
'ENST00000507200' => array(
'start' => '50719802',
'end' => '50743799',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-013'
),
'ENST00000507503' => array(
'start' => '50740267',
'end' => '50744808',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-015'
),
'ENST00000508045' => array(
'start' => '50719570',
'end' => '50744813',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-003'
),
'ENST00000508218' => array(
'start' => '50719597',
'end' => '50741292',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-006'
),
'ENST00000508482' => array(
'start' => '50719629',
'end' => '50751004',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-005'
),
'ENST00000509335' => array(
'start' => '50719598',
'end' => '50741149',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-008'
),
'ENST00000509487' => array(
'start' => '50745906',
'end' => '50751013',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LUC7L3-020'
),
'ENST00000510984' => array(
'start' => '50719647',
'end' => '50741232',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-012'
),
'ENST00000511068' => array(
'start' => '50743672',
'end' => '50744789',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LUC7L3-018'
),
'ENST00000511974' => array(
'start' => '50746575',
'end' => '50751569',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-021'
),
'ENST00000512549' => array(
'start' => '50748389',
'end' => '50750550',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LUC7L3-027'
),
'ENST00000513025' => array(
'start' => '50736635',
'end' => '50741673',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-025'
),
'ENST00000513969' => array(
'start' => '50746614',
'end' => '50752282',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LUC7L3-022'
),
'ENST00000268957' => array(
'start' => '50862980',
'end' => '50867978',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TOB1-002'
),
'ENST00000499247' => array(
'start' => '50862223',
'end' => '50866345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TOB1-001'
),
'ENST00000509385' => array(
'start' => '50863369',
'end' => '50866354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TOB1-003'
),
'ENST00000300458' => array(
'start' => '50761029',
'end' => '50767518',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC00483-001'
),
'ENST00000419688' => array(
'start' => '50764779',
'end' => '50767517',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-002'
),
'ENST00000450727' => array(
'start' => '50761174',
'end' => '50767516',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-003'
),
'ENST00000502517' => array(
'start' => '50762851',
'end' => '50767557',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00483-004'
),
'ENST00000576150' => array(
'start' => '50766559',
'end' => '50767518',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LINC00483-006'
),
'ENST00000311378' => array(
'start' => '50835410',
'end' => '50842348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WFIKKN2-001'
),
'ENST00000426127' => array(
'start' => '50834650',
'end' => '50841308',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WFIKKN2-002'
),
'ENST00000487833' => array(
'start' => '50847950',
'end' => '50849270',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL5P33-001'
),
'ENST00000510589' => array(
'start' => '50797366',
'end' => '50797651',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-294J22.5-001'
),
'ENST00000572491' => array(
'start' => '50840057',
'end' => '50841626',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-506D12.5-001'
),
'ENST00000620427' => array(
'start' => '50768650',
'end' => '50768730',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR8059-201'
),
'ENSMUST00000021226' => array(
'start' => '94291139',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-001'
),
'ENSMUST00000107820' => array(
'start' => '94291139',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-003'
),
'ENSMUST00000107821' => array(
'start' => '94291061',
'end' => '94321988',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-002'
),
'ENSMUST00000107822' => array(
'start' => '94292774',
'end' => '94321895',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Luc7l3-009'
),
'ENSMUST00000132623' => array(
'start' => '94291061',
'end' => '94297067',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-010'
),
'ENSMUST00000135311' => array(
'start' => '94297015',
'end' => '94299031',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Luc7l3-006'
),
'ENSMUST00000138369' => array(
'start' => '94291329',
'end' => '94293223',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Luc7l3-005'
),
'ENSMUST00000165620' => array(
'start' => '94297056',
'end' => '94300231',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Luc7l3-008'
),
'ENSMUST00000166312' => array(
'start' => '94287890',
'end' => '94321958',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Luc7l3-004'
),
'ENSMUST00000171033' => array(
'start' => '94297007',
'end' => '94298218',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Luc7l3-007'
),
'ENSMUST00000041589' => array(
'start' => '94211454',
'end' => '94215495',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tob1-001'
),
'ENSMUST00000061469' => array(
'start' => '94235956',
'end' => '94242707',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wfikkn2-001'
),
'ENSMUST00000131352' => array(
'start' => '94242447',
'end' => '94246005',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wfikkn2-002'
),
'ENSMUST00000178891' => array(
'start' => '94284652',
'end' => '94285985',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm21885-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KM_0001' => array(
'genes_in_region' => array(
'ENSG00000108848' => array(
[maximum depth reached]
),
'ENSG00000141232' => array(
[maximum depth reached]
),
'ENSG00000167117' => array(
[maximum depth reached]
),
'ENSG00000173714' => array(
[maximum depth reached]
),
'ENSG00000243521' => array(
[maximum depth reached]
),
'ENSG00000261976' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Lung',
(int) 32 => 'Adipose',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Bladder',
(int) 45 => 'Heart',
(int) 46 => 'Liver',
(int) 47 => 'Lung',
(int) 48 => 'Muscle',
(int) 49 => 'Muscle',
(int) 50 => 'Muscle',
(int) 51 => 'Adipose',
(int) 52 => 'Adrenal',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Lung',
(int) 58 => 'Muscle',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Bladder',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Liver',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Adipose',
(int) 71 => 'Brain',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Brain',
(int) 85 => 'Breast',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Liver',
(int) 90 => 'Lung',
(int) 91 => 'Muscle',
(int) 92 => 'Ovary',
(int) 93 => 'Placenta',
(int) 94 => 'Testis',
(int) 95 => 'Adipose',
(int) 96 => 'Adrenal',
(int) 97 => 'Brain',
(int) 98 => 'Heart',
(int) 99 => 'Kidney',
(int) 100 => 'Liver',
(int) 101 => 'Lung',
(int) 102 => 'Ovary',
(int) 103 => 'Testis',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Breast',
(int) 108 => 'Colon',
(int) 109 => 'Ovary',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Brain',
(int) 113 => 'Breast',
(int) 114 => 'Colon',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Lung',
(int) 119 => 'Muscle',
(int) 120 => 'Ovary',
(int) 121 => 'Testis',
(int) 122 => 'Breast',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Kidney',
(int) 130 => 'Lung',
(int) 131 => 'Ovary',
(int) 132 => 'Placenta',
(int) 133 => 'Testis',
(int) 134 => 'Colon',
(int) 135 => 'Liver',
(int) 136 => 'Placenta',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Brain',
(int) 140 => 'Breast',
(int) 141 => 'Colon',
(int) 142 => 'Heart',
(int) 143 => 'Kidney',
(int) 144 => 'Liver',
(int) 145 => 'Ovary',
(int) 146 => 'Testis',
(int) 147 => 'Adipose',
(int) 148 => 'Kidney',
(int) 149 => 'Lung'
)
),
'CIL_0007KM_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000020863' => array(
[maximum depth reached]
),
'ENSMUSG00000037573' => array(
[maximum depth reached]
),
'ENSMUSG00000044177' => array(
[maximum depth reached]
),
'ENSMUSG00000094091' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adrenal',
(int) 27 => 'Brain',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Brain',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Brain',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Brain',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Adrenal',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Liver',
(int) 49 => 'Lung',
(int) 50 => 'Muscle',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Bladder',
(int) 57 => 'Brain',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Liver',
(int) 63 => 'Lung',
(int) 64 => 'Muscle',
(int) 65 => 'Ovary',
(int) 66 => 'Placenta',
(int) 67 => 'Testis',
(int) 68 => 'Adipose',
(int) 69 => 'Adrenal',
(int) 70 => 'Bladder',
(int) 71 => 'Brain',
(int) 72 => 'Breast',
(int) 73 => 'Colon',
(int) 74 => 'Heart',
(int) 75 => 'Kidney',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Testis',
(int) 82 => 'Brain',
(int) 83 => 'Colon',
(int) 84 => 'Liver',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KM_0004',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '17914558',
'seq_end' => '17915083',
'region_length' => '525',
'region_type' => 'UCNEbase',
'el_id' => 'LUC7L3'
)
)
$gene_el = array(
'ENSMUST00000178891' => array(
'Brain' => array(
'average_FPKM' => '0.054',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '2.666',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.18'
),
'Ovary' => array(
'average_FPKM' => '0.166',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.408',
'stddev_FPKM' => '0.20'
),
'Testis' => array(
'average_FPKM' => '0.233',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000094091'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.054',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '2.666',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.18'
),
'Ovary' => array(
'average_FPKM' => '0.166',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.408',
'stddev_FPKM' => '0.20'
),
'Testis' => array(
'average_FPKM' => '0.233',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000178891'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(LUC7L3)