C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box G1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020950 Foxg1 10090 + 12:49382693-49386867 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021333 Foxg1-001 49383007-49386856 protein_coding
  ENSMUST00000135006 Foxg1-002 49382693-49384364 processed_transcript
  ENSMUST00000154930 Foxg1-003 49382800-49383600 processed_transcript
  ENSMUST00000156952 Foxg1-004 49382883-49386854 retained_intron
  ENSMUST00000179669 Foxg1-201 49382883-49386867 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000021333ENSMUST00000154930ENSMUST00000156952ENSMUST00000179669
Transcript ID Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000021333 25.969±13.07 0.009±0.00 0.033±0.03 N/A 0.093±0.12 N/A 0.031±0.00 0.046±0.02 0.363±0.10
ENSMUST00000154930 N/A N/A N/A 0.098±0.00 N/A 0.021±0.00 N/A 0.275±0.14 N/A
ENSMUST00000156952 4.590±2.08 N/A N/A N/A 0.050±0.05 0.005±0.00 0.004±0.00 N/A 0.028±0.01
ENSMUST00000179669 7.981±2.78 N/A N/A N/A 0.003±0.00 0.005±0.00 0.004±0.00 N/A 0.035±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095I CIL_00095I_0002 VISTA 12:49074505-49676068
CIL_0008Y3 CIL_0008Y3_0002 VISTA 12:49210396-49811504
CIL_0007MH CIL_0007MH_0002 UCNEbase 12:49381405-50295756

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002052 IMP positive regulation of neuroblast proliferation
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007346 IMP regulation of mitotic cell cycle
GO:0009953 IMP dorsal/ventral pattern formation
GO:0010468 IMP regulation of gene expression
GO:0016199 IMP axon midline choice point recognition
GO:0021852 IDA pyramidal neuron migration
GO:0021954 IMP central nervous system neuron development
GO:0021987 IDA cerebral cortex development
GO:0022008 IDA neurogenesis
GO:0030900 IMP forebrain development
GO:0042472 IGI inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045665 IMP negative regulation of neuron differentiation
GO:0045666 IGI positive regulation of neuron differentiation
GO:0045787 IMP positive regulation of cell cycle
GO:0048664 IDA neuron fate determination
GO:0048667 IMP cell morphogenesis involved in neuron differentiation
GO:0051726 IDA regulation of cell cycle
GO:2000177 IGI regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070769 foxg1a forkhead box G1a protein_coding Danio_rerio
ENSG00000176165 FOXG1 forkhead box G1 protein_coding Homo_sapiens

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