C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box G1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021333 Foxg1-001 ENSMUSG00000020950 10090 + 12:49383007-49386856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverOvaryPlacentaTestisENSMUST00000021333
Transcript ID Brain Breast Heart Liver Ovary Placenta Testis
ENSMUST00000021333 25.969±13.07 0.009±0.00 0.033±0.03 0.093±0.12 0.031±0.00 0.046±0.02 0.363±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095I CIL_00095I_0002 VISTA 12:49074505-49676068
CIL_0008Y3 CIL_0008Y3_0002 VISTA 12:49210396-49811504
CIL_0007MH CIL_0007MH_0002 UCNEbase 12:49381405-50295756

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0002052 IMP positive regulation of neuroblast proliferation
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007346 IMP regulation of mitotic cell cycle
GO:0009953 IMP dorsal/ventral pattern formation
GO:0010468 IMP regulation of gene expression
GO:0016199 IMP axon midline choice point recognition
GO:0021852 IDA pyramidal neuron migration
GO:0021954 IMP central nervous system neuron development
GO:0021987 IDA cerebral cortex development
GO:0022008 IDA neurogenesis
GO:0030900 IMP forebrain development
GO:0042472 IGI inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045665 IMP negative regulation of neuron differentiation
GO:0045666 IGI positive regulation of neuron differentiation
GO:0045787 IMP positive regulation of cell cycle
GO:0048664 IDA neuron fate determination
GO:0048667 IMP cell morphogenesis involved in neuron differentiation
GO:0051726 IDA regulation of cell cycle
GO:2000177 IGI regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306268 FOXI1-001 protein_coding Homo_sapiens 3e-25 121
ENST00000313071 FOXG1-001 protein_coding Homo_sapiens 0 3783
ENST00000388920 FOXI2-001 protein_coding Homo_sapiens 1e-21 110
ENST00000428390 FOXI3-001 protein_coding Homo_sapiens 5e-20 104
ENST00000449804 FOXI1-002 protein_coding Homo_sapiens 1e-19 102
ENST00000506382 WI2-2373I1.1-001 processed_pseudogene Homo_sapiens 2e-23 111

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