C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007MH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
FOXG1 UCNEbase 9606 14:28763941-29529087
GeneTranscriptPositionBiotype
ENSG00000176165 (FOXG1)
forkhead box G1 		ENST00000313071 (FOXG1-001) 28766974-28770273 protein_coding
ENSG00000186960 (C14orf23)
long intergenic non-protein coding RNA 1551 		ENST00000399387 (C14orf23-003) 28772704-28793234 lincRNA
ENST00000548213 (C14orf23-005) 28772795-28813453 lincRNA
ENST00000550266 (C14orf23-006) 28785871-28792803 lincRNA
ENST00000552957 (C14orf23-004) 28772785-28778560 lincRNA
ENSG00000257056 (RP11-966I7.2)
 ENST00000535153 (RP11-966I7.2-001) 28783491-28785787 lincRNA
ENSG00000257522 (RP11-562L8.1)
 ENST00000548306 (RP11-562L8.1-002) 29274753-29381290 lincRNA
ENST00000548665 (RP11-562L8.1-005) 29274723-29353802 lincRNA
ENST00000550975 (RP11-562L8.1-004) 29264844-29378560 lincRNA
ENST00000551040 (RP11-562L8.1-003) 29264381-29378656 antisense
ENST00000551110 (RP11-562L8.1-001) 29267592-29381295 lincRNA
ENSG00000257523 (CTD-2384A14.2)
 ENST00000552028 (CTD-2384A14.2-001) 28975836-28978924 lincRNA
ENSG00000257748 (RP11-966I7.3)
 ENST00000549013 (RP11-966I7.3-001) 28800084-28830204 lincRNA
ENSG00000258028 (RP11-148E17.1)
 ENST00000551227 (RP11-148E17.1-001) 28936889-29028763 lincRNA
ENSG00000258038 (CTD-2384A14.1)
 ENST00000548087 (CTD-2384A14.1-003) 28830247-28837717 lincRNA
ENST00000548775 (CTD-2384A14.1-005) 28830445-28842082 lincRNA
ENST00000550122 (CTD-2384A14.1-002) 28830250-28837658 lincRNA
ENST00000550827 (CTD-2384A14.1-004) 28830244-28842337 lincRNA
ENST00000550990 (CTD-2384A14.1-006) 28931570-28968392 lincRNA
ENST00000551588 (CTD-2384A14.1-001) 28830248-28968400 lincRNA
ENSG00000258065 (RP11-30H9.1)
 ENST00000546905 (RP11-30H9.1-001) 28857384-28858701 processed_pseudogene
ENSG00000258107 (RP11-260G13.1)
 ENST00000549515 (RP11-260G13.1-001) 29390346-29436412 lincRNA
ENSG00000274762 (RP11-966I7.4)
 ENST00000622740 (RP11-966I7.4-001) 28818741-28819258 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007MH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
FOXG1 UCNEbase 10090 12:49381405-50295756
GeneTranscriptPositionBiotype
ENSMUSG00000020950 (Foxg1)
forkhead box G1 		ENSMUST00000021333 (Foxg1-001) 49383007-49386856 protein_coding
ENSMUST00000135006 (Foxg1-002) 49382693-49384364 processed_transcript
ENSMUST00000154930 (Foxg1-003) 49382800-49383600 processed_transcript
ENSMUST00000156952 (Foxg1-004) 49382883-49386854 retained_intron
ENSMUST00000179669 (Foxg1-201) 49382883-49386867 protein_coding
ENSMUSG00000045946 (Gm9804)
predicted gene 9804 		ENSMUST00000056234 (Gm9804-201) 49401277-49401837 protein_coding
ENSMUSG00000089922 (3110039M20Rik)
RIKEN cDNA 3110039M20 gene 		ENSMUST00000110746 (3110039M20Rik-001) 49385174-49394127 protein_coding
ENSMUST00000127041 (3110039M20Rik-002) 49389652-49407346 processed_transcript
ENSMUST00000145291 (3110039M20Rik-003) 49390659-49407134 processed_transcript
ENSMUSG00000098219 (Gm7481)
predicted gene 7481 		ENSMUST00000182020 (Gm7481-001) 49840757-49841751 processed_pseudogene
ENSMUSG00000100844 (RP24-490H13.3)
RIKEN cDNA 1810007C17 gene 		ENSMUST00000187665 (RP24-490H13.3-001) 49476991-49480862 lincRNA

Mus musculus Ensembl (GRCm38)

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CIL_0007MH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
FOXG1 UCNEbase 7955 17:29069657-29176317
GeneTranscriptPositionBiotype
ENSDARG00000070769 (foxg1a)
forkhead box G1a 		ENSDART00000104204 (foxg1a-001) 29176137-29178472 protein_coding
ENSDARG00000097263 (si:dkey-28g23.3)
si:dkey-28g23.3 		ENSDART00000157210 (si:dkey-28g23.3-001) 29003691-29081611 antisense

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007MH_0001ENSG00000176165ENST00000313071ENSG00000186960ENST00000399387ENST00000548213ENST00000550266ENST00000552957ENSG00000257056ENST00000535153ENSG00000257522ENST00000548306ENST00000548665ENST00000550975ENST00000551040ENST00000551110ENSG00000257523ENST00000552028ENSG00000257748ENST00000549013ENSG00000258028ENST00000551227ENSG00000258038ENST00000548087ENST00000548775ENST00000550122ENST00000550827ENST00000550990ENST00000551588ENSG00000258065ENST00000546905ENSG00000258107ENST00000549515ENSG00000274762ENST00000622740CIL_0007MH_0002ENSMUSG00000020950ENSMUST00000021333ENSMUST00000135006ENSMUST00000154930ENSMUST00000156952ENSMUST00000179669ENSMUSG00000045946ENSMUST00000056234ENSMUSG00000089922ENSMUST00000110746ENSMUST00000127041ENSMUST00000145291ENSMUSG00000098219ENSMUST00000182020ENSMUSG00000100844ENSMUST00000187665CIL_0007MH_0003ENSDARG00000070769ENSDART00000104204ENSDARG00000097263ENSDART00000157210
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007MH_0001ENSG00000176165ENST00000313071ENSG00000186960ENST00000399387ENST00000548213ENST00000550266ENST00000552957ENSG00000257056ENST00000535153ENSG00000257522ENST00000548306ENST00000548665ENST00000550975ENST00000551040ENST00000551110ENSG00000257523ENST00000552028ENSG00000257748ENST00000549013ENSG00000258028ENST00000551227ENSG00000258038ENST00000548087ENST00000550122ENST00000550827ENST00000551588ENSG00000258065ENST00000546905ENSG00000258107ENST00000549515ENSG00000274762ENST00000622740CIL_0007MH_0002ENSMUSG00000020950ENSMUST00000021333ENSMUST00000154930ENSMUST00000156952ENSMUST00000179669ENSMUSG00000045946ENSMUST00000056234ENSMUSG00000089922ENSMUST00000110746ENSMUST00000127041ENSMUSG00000098219ENSMUST00000182020ENSMUSG00000100844ENSMUST00000187665CIL_0007MH_0003ENSDARG00000070769ENSDART00000104204ENSDARG00000097263ENSDART00000157210
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000176165 ENST00000313071 0.026±0.00 0.125±0.00 6.404±3.41 0.004±0.00 0.048±0.00 N/A N/A N/A 0.064±0.00 N/A 0.068±0.02 0.030±0.00 5.329±1.19
ENSG00000186960 ENST00000399387 N/A N/A 0.723±0.08 0.015±0.00 N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A 0.485±0.00
ENST00000548213 0.073±0.00 0.142±0.00 N/A 0.069±0.00 0.064±0.00 0.090±0.00 0.308±0.00 0.123±0.00 0.079±0.00 0.146±0.00 0.042±0.00 N/A N/A
ENST00000550266 0.114±0.00 0.418±0.00 N/A 0.255±0.07 0.069±0.00 0.178±0.00 0.338±0.11 N/A 0.299±0.00 N/A 0.428±0.17 0.709±0.00 N/A
ENST00000552957 N/A N/A 1.376±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.255±1.02
ENSG00000257056 ENST00000535153 N/A N/A 0.476±0.13 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.22
ENSG00000257522 ENST00000548306 N/A N/A 0.117±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548665 N/A N/A N/A N/A N/A 0.023±0.00 N/A 0.022±0.00 0.156±0.00 0.176±0.00 N/A N/A 0.068±0.00
ENST00000550975 N/A N/A 1.002±0.00 N/A 0.188±0.00 N/A N/A N/A N/A N/A N/A N/A 0.089±0.00
ENST00000551040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00
ENST00000551110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.153±0.00
ENSG00000257523 ENST00000552028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.577±0.18
ENSG00000257748 ENST00000549013 0.065±0.00 0.228±0.00 0.066±0.00 0.155±0.00 0.120±0.00 0.093±0.00 0.228±0.00 0.085±0.00 0.029±0.00 0.029±0.00 0.198±0.00 N/A 2.970±0.51
ENSG00000258028 ENST00000551227 N/A N/A 0.051±0.00 N/A N/A 0.029±0.00 N/A N/A 0.040±0.00 N/A N/A 0.149±0.03 0.450±0.01
ENSG00000258038 ENST00000548087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.273±0.00 N/A
ENST00000548775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550122 0.131±0.00 0.360±0.00 0.158±0.00 0.244±0.00 0.105±0.00 0.124±0.00 0.150±0.00 0.066±0.00 0.336±0.00 0.184±0.00 0.047±0.00 0.309±0.00 N/A
ENST00000550827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 1.255±0.77 N/A
ENST00000550990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.182±0.00 1.371±0.11
ENSG00000258065 ENST00000546905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.05 0.082±0.00
ENSG00000258107 ENST00000549515 N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00
ENSG00000274762 ENST00000622740 N/A N/A 0.459±0.34 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.01
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020950 ENSMUST00000021333 N/A N/A 25.969±13.07 0.009±0.00 N/A 0.033±0.03 N/A 0.093±0.12 N/A N/A 0.031±0.00 0.046±0.02 0.363±0.10
ENSMUST00000135006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154930 N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A 0.021±0.00 N/A N/A 0.275±0.14 N/A
ENSMUST00000156952 N/A N/A 4.590±2.08 N/A N/A N/A N/A 0.050±0.05 0.005±0.00 N/A 0.004±0.00 N/A 0.028±0.01
ENSMUST00000179669 N/A N/A 7.981±2.78 N/A N/A N/A N/A 0.003±0.00 0.005±0.00 N/A 0.004±0.00 N/A 0.035±0.00
ENSMUSG00000045946 ENSMUST00000056234 N/A N/A 0.423±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089922 ENSMUST00000110746 N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000127041 N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A 0.097±0.00
ENSMUST00000145291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098219 ENSMUST00000182020 N/A N/A 0.016±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00
ENSMUSG00000100844 ENSMUST00000187665 N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A 0.068±0.00
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000070769 ENSDART00000104204 N/A N/A 1.644±1.55 N/A N/A N/A 0.043±0.02 0.023±0.00 N/A 0.349±0.00 N/A N/A N/A
ENSDARG00000097263 ENSDART00000157210 N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A 0.111±0.00 N/A N/A N/A

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