C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec1 family domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020952 Scfd1 10090 + 12:51377580-51450096 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021335 Scfd1-201 51377580-51450096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021335 9.837±0.76 3.027±0.49 16.135±1.63 11.437±1.09 5.885±1.89 3.475±0.53 4.584±0.45 5.616±1.55 11.708±6.09 5.362±1.39 3.690±0.44 7.316±6.83 21.973±4.65 5.462±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000893 CIL_000893_0002 VISTA 12:50974162-51576029
CIL_0007KV CIL_0007KV_0003 UCNEbase 12:51002016-51608860
CIL_0003SX CIL_0003SX_0002 CGP 12:51348061-51450096
CIL_0003T0 CIL_0003T0_0002 CGP 12:51377580-51605773

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001666 IEA response to hypoxia
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005798 IEA Golgi-associated vesicle
GO:0005801 IEA cis-Golgi network
GO:0005886 IEA plasma membrane
GO:0006890 IEA retrograde vesicle-mediated transport, Golgi to ER
GO:0006892 IEA post-Golgi vesicle-mediated transport
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0006909 ISS phagocytosis
GO:0009636 IEA response to toxic substance
GO:0015031 IEA protein transport
GO:0017119 IEA Golgi transport complex
GO:0019905 IEA syntaxin binding
GO:0031201 ISS SNARE complex
GO:0047485 IEA protein N-terminus binding
GO:0060628 IEA regulation of ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000779 sly1 suppressor of ypt1 protein_coding Danio_rerio
ENSG00000092108 SCFD1 sec1 family domain containing 1 protein_coding Homo_sapiens

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