C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec1 family domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021335 Scfd1-201 ENSMUSG00000020952 10090 + 12:51377580-51450096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021335 9.837±0.76 3.027±0.49 16.135±1.63 11.437±1.09 5.885±1.89 3.475±0.53 4.584±0.45 5.616±1.55 11.708±6.09 5.362±1.39 3.690±0.44 7.316±6.83 21.973±4.65 5.462±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000893 CIL_000893_0002 VISTA 12:50974162-51576029
CIL_0007KV CIL_0007KV_0003 UCNEbase 12:51002016-51608860
CIL_0003SX CIL_0003SX_0002 CGP 12:51348061-51450096
CIL_0003T0 CIL_0003T0_0002 CGP 12:51377580-51605773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001666 IEA response to hypoxia
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005798 IEA Golgi-associated vesicle
GO:0005801 IEA cis-Golgi network
GO:0005886 IEA plasma membrane
GO:0006890 IEA retrograde vesicle-mediated transport, Golgi to ER
GO:0006892 IEA post-Golgi vesicle-mediated transport
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0006909 ISS phagocytosis
GO:0009636 IEA response to toxic substance
GO:0015031 IEA protein transport
GO:0017119 IEA Golgi transport complex
GO:0019905 IEA syntaxin binding
GO:0031201 ISS SNARE complex
GO:0047485 IEA protein N-terminus binding
GO:0060628 IEA regulation of ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311943 SCFD1-009 nonsense_mediated_decay Homo_sapiens 0 1890
ENST00000396629 SCFD1-010 protein_coding Homo_sapiens 0 2322
ENST00000458591 SCFD1-006 protein_coding Homo_sapiens 0 2588
ENST00000463622 SCFD1-008 nonsense_mediated_decay Homo_sapiens 0 2322
ENST00000469043 SCFD1-001 protein_coding Homo_sapiens 0 558
ENST00000484733 SCFD1-002 nonsense_mediated_decay Homo_sapiens 0 2204
ENST00000544052 SCFD1-004 protein_coding Homo_sapiens 0 2459
ENST00000553278 SCFD1-018 retained_intron Homo_sapiens 0 416
ENST00000553280 SCFD1-025 retained_intron Homo_sapiens 6e-33 145
ENST00000553693 SCFD1-015 protein_coding Homo_sapiens 0 586
ENST00000554437 SCFD1-022 nonsense_mediated_decay Homo_sapiens 0 544
ENST00000554486 SCFD1-019 processed_transcript Homo_sapiens 0 399
ENST00000554776 SCFD1-026 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000554819 SCFD1-017 processed_transcript Homo_sapiens 0 774
ENST00000555259 SCFD1-005 nonsense_mediated_decay Homo_sapiens 0 1230
ENST00000555550 SCFD1-023 retained_intron Homo_sapiens 3e-36 156
ENST00000555953 SCFD1-021 retained_intron Homo_sapiens 0 324
ENST00000556256 SCFD1-024 retained_intron Homo_sapiens 0 292
ENST00000556413 SCFD1-016 retained_intron Homo_sapiens 0 241
ENST00000556486 SCFD1-012 retained_intron Homo_sapiens 0 449
ENST00000556534 SCFD1-020 retained_intron Homo_sapiens 0 612
ENST00000556768 SCFD1-007 nonsense_mediated_decay Homo_sapiens 0 1888
ENST00000557076 SCFD1-014 protein_coding Homo_sapiens 0 859
ENST00000557713 SCFD1-013 nonsense_mediated_decay Homo_sapiens 0 363

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