C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sec1 family domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092108 SCFD1 9606 + 14:30622112-30735812 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311943 SCFD1-009 30622327-30735772 nonsense_mediated_decay
  ENST00000396629 SCFD1-010 30622332-30735791 protein_coding
  ENST00000458591 SCFD1-006 30622112-30735812 protein_coding
  ENST00000463622 SCFD1-008 30622319-30735692 nonsense_mediated_decay
  ENST00000469043 SCFD1-001 30639777-30658358 protein_coding
  ENST00000484733 SCFD1-002 30622319-30735799 nonsense_mediated_decay
  ENST00000544052 SCFD1-004 30622319-30735789 protein_coding
  ENST00000553278 SCFD1-018 30669763-30673994 retained_intron
  ENST00000553280 SCFD1-025 30734494-30735794 retained_intron
  ENST00000553693 SCFD1-015 30622329-30650626 protein_coding
  ENST00000554437 SCFD1-022 30705824-30735799 nonsense_mediated_decay
  ENST00000554486 SCFD1-019 30676126-30705885 processed_transcript
  ENST00000554776 SCFD1-026 30628209-30653588 nonsense_mediated_decay
  ENST00000554819 SCFD1-017 30652338-30694858 processed_transcript
  ENST00000555259 SCFD1-005 30622311-30715970 nonsense_mediated_decay
  ENST00000555550 SCFD1-023 30721726-30722842 retained_intron
  ENST00000555953 SCFD1-021 30673273-30675331 retained_intron
  ENST00000556256 SCFD1-024 30721702-30735662 retained_intron
  ENST00000556413 SCFD1-016 30628209-30630917 retained_intron
  ENST00000556486 SCFD1-012 30715298-30735657 retained_intron
  ENST00000556534 SCFD1-020 30638197-30653981 retained_intron
  ENST00000556768 SCFD1-007 30622319-30735791 nonsense_mediated_decay
  ENST00000557076 SCFD1-014 30622328-30649583 protein_coding
  ENST00000557713 SCFD1-013 30622320-30638173 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311943ENST00000458591ENST00000463622ENST00000544052ENST00000554437ENST00000554776ENST00000554819ENST00000556768
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311943 N/A N/A 0.762±0.00 N/A 2.806±0.00 1.740±0.00 1.940±0.43 6.056±0.00 3.891±0.00 2.796±0.19 N/A 7.798±0.19 4.134±0.00 4.274±0.68
ENST00000458591 N/A N/A N/A 2.203±0.00 10.322±0.00 4.344±0.00 2.630±0.00 1.403±0.00 3.673±0.00 3.276±0.00 N/A 6.320±2.52 2.355±0.00 N/A
ENST00000463622 1.349±0.00 3.420±0.00 N/A 4.570±0.00 2.775±0.00 N/A 1.732±0.00 N/A N/A 1.301±0.00 2.297±0.00 N/A N/A N/A
ENST00000544052 4.521±0.00 4.597±0.00 2.103±0.00 2.944±1.12 5.325±0.00 4.456±1.71 4.993±0.00 4.413±2.27 5.890±0.00 3.035±0.19 2.868±0.00 7.367±1.95 4.635±2.20 4.829±1.92
ENST00000554437 N/A N/A N/A N/A N/A N/A N/A N/A 4.472±0.00 N/A N/A 13.401±2.73 6.587±0.00 9.335±1.56
ENST00000554776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.076±0.00 N/A N/A N/A
ENST00000554819 N/A N/A N/A N/A N/A N/A N/A 4.514±0.00 N/A N/A 1.349±0.00 15.324±0.00 6.790±0.00 12.582±0.00
ENST00000556768 2.784±0.00 5.463±0.00 N/A N/A 4.943±0.00 1.745±0.00 N/A 3.383±0.00 4.080±0.00 1.594±0.00 2.411±0.90 5.120±0.00 3.708±0.00 4.374±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000893 CIL_000893_0001 VISTA 14:30219860-30821737
CIL_0003SX CIL_0003SX_0001 CGP 14:30559123-30735812
CIL_0007KV CIL_0007KV_0002 UCNEbase 14:30606668-30894124
CIL_0003T0 CIL_0003T0_0001 CGP 14:30622112-30895065

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001666 IEA response to hypoxia
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005798 ISS Golgi-associated vesicle
GO:0005801 IDA cis-Golgi network
GO:0005886 ISS plasma membrane
GO:0006890 ISS retrograde vesicle-mediated transport, Golgi to ER
GO:0006892 ISS post-Golgi vesicle-mediated transport
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0006909 ISS phagocytosis
GO:0009636 IEP response to toxic substance
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0017119 ISS Golgi transport complex
GO:0019905 ISS syntaxin binding
GO:0031201 ISS SNARE complex
GO:0047485 IEA protein N-terminus binding
GO:0060628 ISS regulation of ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000779 sly1 suppressor of ypt1 protein_coding Danio_rerio
ENSMUSG00000020952 Scfd1 Sec1 family domain containing 1 protein_coding Mus_musculus

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