C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: striatin, calmodulin binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000013130 Strn3-201 ENSMUSG00000020954 10090 - 12:51608541-51691914 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000013130
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000013130 4.131±0.33 10.005±2.26 1.903±0.00 2.973±0.00 1.509±0.16 3.224±2.01 3.195±0.00 4.651±1.27 4.251±1.45 4.284±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KV CIL_0007KV_0003 UCNEbase 12:51002016-51608860
CIL_0004EI CIL_0004EI_0002 CGP 12:51593341-51691914
CIL_0003SU CIL_0003SU_0002 CGP 12:51608541-51738939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000159 IEA protein phosphatase type 2A complex
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005516 IEA calmodulin binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0030425 IEA dendrite
GO:0032355 IEA response to estradiol
GO:0032403 IEA protein complex binding
GO:0033147 IEA negative regulation of intracellular estrogen receptor signaling pathway
GO:0043025 IEA neuronal cell body
GO:0043234 IEA protein complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051721 IEA protein phosphatase 2A binding
GO:0070016 IEA armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000126967 strn3-001 protein_coding Danio_rerio 0 233
ENST00000355683 STRN3-001 protein_coding Homo_sapiens 0 1951
ENST00000357479 STRN3-002 protein_coding Homo_sapiens 0 3866
ENST00000554124 STRN3-008 retained_intron Homo_sapiens 0 935
ENST00000554991 STRN3-005 protein_coding Homo_sapiens 0 475
ENST00000555152 STRN3-006 protein_coding Homo_sapiens 0 569
ENST00000555358 STRN3-003 nonsense_mediated_decay Homo_sapiens 0 1517
ENST00000556577 STRN3-004 protein_coding Homo_sapiens 0 556

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