C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRA stem-loop interacting RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161023 Slirp-001 ENSMUSG00000021040 10090 + 12:87443896-87452206 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TW CIL_0004TW_0002 CGP 12:87305058-87444017
CIL_0004TV CIL_0004TV_0002 CGP 12:87425840-87452206
CIL_0004U2 CIL_0004U2_0002 CGP 12:87443896-87472299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000961 IGI negative regulation of mitochondrial RNA catabolic process
GO:0001669 IDA acrosomal vesicle
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IMP spermatid development
GO:0007338 IMP single fertilization
GO:0030317 IMP sperm motility
GO:0030529 IDA ribonucleoprotein complex
GO:0036126 IDA sperm flagellum
GO:0044822 IEA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070584 IMP mitochondrion morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261531 SNW1-001 protein_coding Homo_sapiens 0 294
ENST00000444644 RP4-641G12.4-001 processed_pseudogene Homo_sapiens 0 261
ENST00000554775 SNW1-004 protein_coding Homo_sapiens 0 294
ENST00000555761 SNW1-003 protein_coding Homo_sapiens 0 512
ENST00000556428 SNW1-002 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000616954 AC068831.17-001 unprocessed_pseudogene Homo_sapiens 0 193

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