C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004TW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100596-ENSG00000100601 CGP 9606 14:77505997-77708020
GeneTranscriptPositionBiotype
ENSG00000100596 (SPTLC2)
serine palmitoyltransferase, long chain base subunit 2 		ENST00000216484 (SPTLC2-001) 77505997-77616773 protein_coding
ENST00000554365 (SPTLC2-004) 77552120-77557321 retained_intron
ENST00000554901 (SPTLC2-002) 77535600-77597321 protein_coding
ENST00000556264 (SPTLC2-006) 77552129-77554926 processed_transcript
ENST00000556607 (SPTLC2-005) 77512341-77552192 nonsense_mediated_decay
ENST00000557566 (SPTLC2-003) 77578766-77597351 retained_intron
ENSG00000100601 (ALKBH1)
alkB, alkylation repair homolog 1 (E. coli) 		ENST00000216489 (ALKBH1-001) 77672404-77708020 protein_coding
ENST00000554097 (ALKBH1-004) 77691733-77704452 processed_transcript
ENST00000555100 (ALKBH1-003) 77674103-77707992 nonsense_mediated_decay
ENST00000557057 (ALKBH1-002) 77673075-77708010 nonsense_mediated_decay
ENSG00000239272 (RPL21P10)
ribosomal protein L21 pseudogene 10 		ENST00000463521 (RPL21P10-001) 77683202-77683989 processed_pseudogene
ENSG00000240233 (RN7SL587P)
RNA, 7SL, cytoplasmic 587, pseudogene 		ENST00000459853 (RN7SL587P-201) 77547566-77547846 misc_RNA
ENSG00000258917 (ZMYND19P1)
zinc finger, MYND-type containing 19 pseudogene 1 		ENST00000554267 (ZMYND19P1-001) 77696591-77697377 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004TW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021036-ENSMUSG00000079036 CGP 10090 12:87305058-87444017
GeneTranscriptPositionBiotype
ENSMUSG00000021036 (Sptlc2)
serine palmitoyltransferase, long chain base subunit 2 		ENSMUST00000021424 (Sptlc2-001) 87305058-87388355 protein_coding
ENSMUST00000167911 (Sptlc2-004) 87346734-87388241 processed_transcript
ENSMUST00000169845 (Sptlc2-002) 87308070-87343848 retained_intron
ENSMUST00000170110 (Sptlc2-005) 87346458-87350381 retained_intron
ENSMUST00000170720 (Sptlc2-003) 87309639-87328613 processed_transcript
ENSMUSG00000021040 (Slirp)
SRA stem-loop interacting RNA binding protein 		ENSMUST00000077462 (Slirp-005) 87443936-87449904 protein_coding
ENSMUST00000160488 (Slirp-003) 87443912-87449920 protein_coding
ENSMUST00000160880 (Slirp-004) 87443946-87449924 protein_coding
ENSMUST00000161023 (Slirp-001) 87443896-87452206 protein_coding
ENSMUSG00000064938 (Mir3068)
microRNA 3068 		ENSMUST00000083004 (Mir3068-201) 87437682-87437817 snoRNA
ENSMUSG00000097667 (Gm26764)
predicted gene, 26764 		ENSMUST00000181175 (Gm26764-201) 87332488-87335655 lincRNA
ENSMUSG00000100306 (RP23-285E19.4)
predicted gene 29362 		ENSMUST00000187898 (RP23-285E19.4-001) 87437684-87437816 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TW_0001ENSG00000100596ENST00000216484ENST00000554365ENST00000554901ENST00000556264ENST00000556607ENST00000557566ENSG00000100601ENST00000216489ENST00000554097ENST00000555100ENST00000557057ENSG00000239272ENST00000463521ENSG00000240233ENST00000459853ENSG00000258917ENST00000554267CIL_0004TW_0002ENSMUSG00000021036ENSMUST00000021424ENSMUST00000167911ENSMUST00000169845ENSMUST00000170110ENSMUST00000170720ENSMUSG00000021040ENSMUST00000077462ENSMUST00000160488ENSMUST00000160880ENSMUST00000161023ENSMUSG00000064938ENSMUST00000083004ENSMUSG00000097667ENSMUST00000181175ENSMUSG00000100306ENSMUST00000187898
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TW_0001ENSG00000100596ENST00000216484ENST00000554901ENSG00000100601ENST00000216489ENST00000554097ENST00000555100ENST00000557057ENSG00000239272ENST00000463521ENSG00000240233ENST00000459853ENSG00000258917ENST00000554267CIL_0004TW_0002ENSMUSG00000021036ENSMUST00000021424ENSMUST00000167911ENSMUST00000169845ENSMUST00000170720ENSMUSG00000021040ENSMUST00000077462ENSMUST00000160488ENSMUSG00000064938ENSMUST00000083004ENSMUSG00000097667ENSMUST00000181175ENSMUSG00000100306ENSMUST00000187898
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100596 ENST00000216484 26.960±0.00 7.777±0.00 3.360±0.00 7.455±1.85 8.203±1.17 7.745±1.08 2.051±0.87 4.632±3.21 2.414±0.82 5.282±0.10 1.780±0.00 4.282±1.31 9.639±0.40 4.757±1.64
ENST00000554365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554901 N/A N/A 4.350±0.00 N/A N/A N/A N/A N/A 3.750±0.00 N/A N/A 2.488±0.38 N/A N/A
ENST00000556264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100601 ENST00000216489 0.435±0.00 0.410±0.00 0.375±0.00 0.783±0.35 0.716±0.00 1.216±0.01 0.556±0.09 0.890±0.05 0.470±0.27 1.112±0.36 0.534±0.00 1.066±0.23 1.579±0.43 2.081±0.75
ENST00000554097 N/A N/A 0.976±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.187±0.00 2.202±0.00
ENST00000555100 N/A N/A N/A N/A N/A 1.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557057 2.349±0.00 3.121±0.00 0.408±0.00 0.983±0.76 1.283±0.01 2.683±0.00 3.023±0.00 2.960±0.00 1.128±0.61 2.901±0.00 1.645±0.45 1.640±1.10 3.078±1.45 3.329±1.88
ENSG00000239272 ENST00000463521 0.081±0.00 1.191±0.00 N/A 0.453±0.00 0.271±0.05 0.203±0.00 N/A 0.218±0.09 0.025±0.00 0.053±0.00 N/A 0.464±0.32 0.154±0.00 0.717±0.19
ENSG00000240233 ENST00000459853 1.105±0.00 2.568±0.00 N/A 0.082±0.00 0.078±0.00 0.282±0.00 0.140±0.00 0.905±0.00 0.395±0.00 N/A N/A 0.312±0.00 0.151±0.00 0.111±0.04
ENSG00000258917 ENST00000554267 N/A N/A N/A N/A 0.037±0.02 N/A 0.110±0.00 0.100±0.00 0.066±0.00 N/A N/A 0.070±0.00 N/A 0.031±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021036 ENSMUST00000021424 4.140±0.94 7.748±2.06 6.057±0.10 4.011±1.60 3.133±0.75 8.123±2.38 1.438±0.12 6.715±0.23 1.850±0.75 12.306±0.46 0.602±0.09 6.043±1.72 8.071±2.30 0.707±0.14
ENSMUST00000167911 9.763±0.00 62.987±10.47 N/A N/A 9.536±0.00 27.949±11.72 N/A 10.898±0.00 4.428±1.15 20.754±4.00 1.159±0.08 11.643±0.00 33.685±12.81 N/A
ENSMUST00000169845 3.728±0.46 7.384±0.92 2.754±0.40 1.678±0.00 2.496±0.59 8.783±1.19 0.987±0.09 4.267±0.53 1.179±0.42 9.147±2.37 0.216±0.04 4.540±1.05 4.279±0.14 1.661±0.06
ENSMUST00000170110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170720 N/A N/A 16.543±0.81 N/A N/A N/A N/A 14.241±0.34 6.647±1.11 N/A 1.952±0.34 38.504±4.69 42.153±17.69 3.502±0.24
ENSMUSG00000021040 ENSMUST00000077462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.383±0.00 N/A N/A N/A
ENSMUST00000160488 17.451±0.40 8.935±1.29 52.183±9.06 30.231±0.00 18.160±4.52 10.035±1.46 20.903±1.71 25.671±2.62 27.157±18.93 11.384±0.73 23.558±3.78 13.182±1.99 42.686±0.00 29.039±2.26
ENSMUST00000160880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064938 ENSMUST00000083004 N/A N/A N/A N/A N/A N/A N/A N/A 141.012±121.49 649.681±55.53 4.506±0.00 N/A 5.355±0.00 N/A
ENSMUSG00000097667 ENSMUST00000181175 0.133±0.08 0.230±0.10 0.206±0.00 0.083±0.07 0.151±0.09 0.224±0.11 0.018±0.00 0.131±0.04 0.145±0.10 0.235±0.05 0.275±0.07 0.291±0.22 0.330±0.17 0.055±0.03
ENSMUSG00000100306 ENSMUST00000187898 N/A N/A 9.811±1.51 21.780±10.04 N/A N/A N/A N/A 17.145±9.07 N/A N/A 1341.324±943.31 8.236±5.78 6.908±0.00

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