C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YLP motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164558 Ylpm1-002 ENSMUSG00000021244 10090 + 12:85014701-85070492 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000164558
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000164558 2.200±0.60 20.837±0.00 0.697±0.25 0.636±0.11 8.661±5.61 5.509±4.94 26.669±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AX CIL_0005AX_0002 CGP 12:84970897-85070515
CIL_0003U2 CIL_0003U2_0002 CGP 12:84996321-85106431

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005634 IDA nucleus
GO:0032204 IDA regulation of telomere maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325680 YLPM1-001 protein_coding Homo_sapiens 0 5624
ENST00000547879 YLPM1-003 protein_coding Homo_sapiens 0 1718
ENST00000549197 YLPM1-005 retained_intron Homo_sapiens 0 529
ENST00000549293 YLPM1-002 nonsense_mediated_decay Homo_sapiens 0 6336
ENST00000550021 YLPM1-007 retained_intron Homo_sapiens 1e-27 126
ENST00000552421 YLPM1-008 protein_coding Homo_sapiens 0 2161
ENST00000554107 YLPM1-010 protein_coding Homo_sapiens 0 279

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