C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YLP motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021670 Ylpm1-001 ENSMUSG00000021244 10090 + 12:84996352-85070515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021670
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021670 1.560±1.00 1.199±0.00 3.893±1.45 11.987±6.60 0.995±0.24 0.715±0.11 1.599±0.39 1.573±0.18 1.591±0.94 1.194±0.34 1.152±0.42 3.947±6.02 4.333±2.93 10.188±5.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AX CIL_0005AX_0002 CGP 12:84970897-85070515
CIL_0003U2 CIL_0003U2_0002 CGP 12:84996321-85106431

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0032204 IDA regulation of telomere maintenance
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000064140 ylpm1-201 protein_coding Danio_rerio 0 394
ENSDART00000133012 ylpm1-001 protein_coding Danio_rerio 0 394
ENST00000325680 YLPM1-001 protein_coding Homo_sapiens 0 6687
ENST00000546901 YLPM1-006 processed_transcript Homo_sapiens 0 213
ENST00000547879 YLPM1-003 protein_coding Homo_sapiens 0 1720
ENST00000549197 YLPM1-005 retained_intron Homo_sapiens 0 555
ENST00000549293 YLPM1-002 nonsense_mediated_decay Homo_sapiens 0 5624
ENST00000550021 YLPM1-007 retained_intron Homo_sapiens 0 217
ENST00000552421 YLPM1-008 protein_coding Homo_sapiens 0 2990
ENST00000554107 YLPM1-010 protein_coding Homo_sapiens 0 281

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