C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 153
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021374 Nup153 10090 - 13:46679905-46727940 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021803 Nup153-001 46679905-46727940 protein_coding
  ENSMUST00000182156 Nup153-003 46681075-46681952 retained_intron
  ENSMUST00000182358 Nup153-005 46699649-46702130 retained_intron
  ENSMUST00000182914 Nup153-006 46682845-46684014 retained_intron
  ENSMUST00000183299 Nup153-002 46709911-46717267 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021803ENSMUST00000182914
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021803 6.154±3.63 6.934±0.22 7.696±0.65 7.297±3.35 5.621±3.39 5.204±2.00 2.716±0.85 3.211±0.82 6.872±6.03 7.861±3.15 5.470±1.58 7.711±3.90 11.978±4.59 29.036±10.36
ENSMUST00000182914 17.949±5.22 17.290±0.00 N/A N/A 24.904±5.55 16.307±2.57 7.764±1.14 10.322±2.07 6.387±0.63 23.546±5.50 N/A 35.998±5.91 N/A 72.939±2.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C9 CIL_0009C9_0002 VISTA 13:46271320-46874349
CIL_0008JF CIL_0008JF_0002 VISTA 13:46271337-46874342
CIL_0008B7 CIL_0008B7_0002 VISTA 13:46332291-46935792
CIL_00081D CIL_00081D_0002 VISTA 13:46435395-47036634
CIL_00090E CIL_00090E_0002 VISTA 13:46584783-47186478
CIL_0003RM CIL_0003RM_0002 CGP 13:46669522-46727940
CIL_0003RN CIL_0003RN_0002 CGP 13:46679905-46929718

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IEA protein binding
GO:0005643 IEA nuclear pore
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0017056 IEA structural constituent of nuclear pore
GO:0031965 IEA nuclear membrane
GO:0034399 IEA nuclear periphery
GO:0042405 IEA nuclear inclusion body
GO:0042802 IEA identical protein binding
GO:0043495 IEA protein anchor
GO:0044615 IEA nuclear pore nuclear basket
GO:0046832 IEA negative regulation of RNA export from nucleus
GO:0051292 IEA nuclear pore complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020323 nup153 nucleoporin 153 protein_coding Danio_rerio
ENSG00000124789 NUP153 nucleoporin 153kDa protein_coding Homo_sapiens

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