C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003RM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137414-ENSG00000124789 CGP 9606 6:17600355-17706834
GeneTranscriptPositionBiotype
ENSG00000124789 (NUP153)
nucleoporin 153kDa 		ENST00000262077 (NUP153-001) 17615038-17706387 protein_coding
ENST00000537253 (NUP153-201) 17615035-17706834 protein_coding
ENST00000613258 (NUP153-202) 17615035-17706834 protein_coding
ENSG00000137414 (FAM8A1)
family with sequence similarity 8, member A1 		ENST00000259963 (FAM8A1-001) 17600355-17611719 protein_coding
ENSG00000206881 (RNU6-190P)
RNA, U6 small nuclear 190, pseudogene 		ENST00000384154 (RNU6-190P-201) 17619533-17619634 snRNA
CIL_0003RM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000069237-ENSMUSG00000021374 CGP 10090 13:46669522-46727940
GeneTranscriptPositionBiotype
ENSMUSG00000021374 (Nup153)
nucleoporin 153 		ENSMUST00000021803 (Nup153-001) 46679905-46727940 protein_coding
ENSMUST00000182156 (Nup153-003) 46681075-46681952 retained_intron
ENSMUST00000182358 (Nup153-005) 46699649-46702130 retained_intron
ENSMUST00000182914 (Nup153-006) 46682845-46684014 retained_intron
ENSMUST00000183299 (Nup153-002) 46709911-46717267 processed_transcript
ENSMUSG00000069237 (C78339)
expressed sequence C78339 		ENSMUST00000099547 (C78339-001) 46669522-46678056 protein_coding
ENSMUST00000150376 (C78339-002) 46671191-46673814 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RM_0001ENSG00000124789ENST00000262077ENST00000537253ENST00000613258ENSG00000137414ENST00000259963ENSG00000206881ENST00000384154CIL_0003RM_0002ENSMUSG00000021374ENSMUST00000021803ENSMUST00000182156ENSMUST00000182358ENSMUST00000182914ENSMUST00000183299ENSMUSG00000069237ENSMUST00000099547ENSMUST00000150376
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RM_0001ENSG00000124789ENST00000262077ENST00000613258ENSG00000137414ENST00000259963ENSG00000206881ENST00000384154CIL_0003RM_0002ENSMUSG00000021374ENSMUST00000021803ENSMUST00000182914ENSMUSG00000069237ENSMUST00000099547ENSMUST00000150376
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124789 ENST00000262077 7.464±0.00 4.699±0.00 3.915±0.00 4.582±0.36 6.522±1.67 4.871±0.37 3.227±2.30 3.534±1.39 4.212±2.55 4.911±0.43 7.134±3.29 7.982±1.45 6.389±0.39 16.422±0.12
ENST00000537253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613258 N/A 1.155±0.00 N/A N/A 1.264±0.00 N/A N/A 1.122±0.00 N/A 3.297±0.00 N/A N/A N/A N/A
ENSG00000137414 ENST00000259963 10.141±0.00 2.980±0.00 4.027±0.00 10.193±2.89 5.711±3.23 8.091±2.52 3.726±2.04 11.226±1.77 7.804±4.42 6.861±1.53 4.253±2.54 7.935±2.57 3.822±0.57 9.277±4.23
ENSG00000206881 ENST00000384154 N/A N/A N/A N/A N/A 0.217±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021374 ENSMUST00000021803 6.154±3.63 6.934±0.22 7.696±0.65 7.297±3.35 5.621±3.39 5.204±2.00 2.716±0.85 3.211±0.82 6.872±6.03 7.861±3.15 5.470±1.58 7.711±3.90 11.978±4.59 29.036±10.36
ENSMUST00000182156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182914 17.949±5.22 17.290±0.00 N/A N/A 24.904±5.55 16.307±2.57 7.764±1.14 10.322±2.07 6.387±0.63 23.546±5.50 N/A 35.998±5.91 N/A 72.939±2.88
ENSMUST00000183299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000069237 ENSMUST00000099547 15.748±1.23 19.511±9.41 24.451±0.68 19.530±7.92 10.252±3.85 12.691±8.27 5.762±0.24 12.989±1.62 8.996±2.22 15.131±3.57 7.282±1.18 12.069±8.40 12.162±3.64 11.545±5.21
ENSMUST00000150376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.694±0.00

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