C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003RN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124789-ENSG00000137177 CGP 9606 6:17615035-17987623
GeneTranscriptPositionBiotype
ENSG00000124789 (NUP153)
nucleoporin 153kDa 		ENST00000262077 (NUP153-001) 17615038-17706387 protein_coding
ENST00000537253 (NUP153-201) 17615035-17706834 protein_coding
ENST00000613258 (NUP153-202) 17615035-17706834 protein_coding
ENSG00000137177 (KIF13A)
kinesin family member 13A 		ENST00000259711 (KIF13A-001) 17763693-17987569 protein_coding
ENST00000358380 (KIF13A-003) 17770365-17817200 protein_coding
ENST00000378814 (KIF13A-005) 17759183-17987463 protein_coding
ENST00000378826 (KIF13A-002) 17763695-17987482 protein_coding
ENST00000378843 (KIF13A-004) 17763695-17987481 protein_coding
ENST00000502297 (KIF13A-006) 17759254-17794697 protein_coding
ENST00000502704 (KIF13A-008) 17950406-17987623 protein_coding
ENST00000503342 (KIF13A-011) 17812044-17817190 processed_transcript
ENST00000505588 (KIF13A-010) 17873263-17987077 retained_intron
ENST00000506044 (KIF13A-013) 17780760-17796790 protein_coding
ENST00000507576 (KIF13A-009) 17855477-17987551 processed_transcript
ENST00000514714 (KIF13A-012) 17785593-17795032 processed_transcript
ENSG00000201442 (Y_RNA)
Y RNA 		ENST00000364572 (Y_RNA.1-456) 17737458-17737556 misc_RNA
ENSG00000206881 (RNU6-190P)
RNA, U6 small nuclear 190, pseudogene 		ENST00000384154 (RNU6-190P-201) 17619533-17619634 snRNA
ENSG00000220920 (RP3-525L6.2)
 ENST00000407932 (RP3-525L6.2-001) 17953572-17953930 unprocessed_pseudogene
CIL_0003RN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021374-ENSMUSG00000021375 CGP 10090 13:46679905-46929718
GeneTranscriptPositionBiotype
ENSMUSG00000021374 (Nup153)
nucleoporin 153 		ENSMUST00000021803 (Nup153-001) 46679905-46727940 protein_coding
ENSMUST00000182156 (Nup153-003) 46681075-46681952 retained_intron
ENSMUST00000182358 (Nup153-005) 46699649-46702130 retained_intron
ENSMUST00000182914 (Nup153-006) 46682845-46684014 retained_intron
ENSMUST00000183299 (Nup153-002) 46709911-46717267 processed_transcript
ENSMUSG00000021375 (Kif13a)
kinesin family member 13A 		ENSMUST00000056978 (Kif13a-201) 46749087-46929718 protein_coding
ENSMUSG00000064558 (Gm24620)
predicted gene, 24620 		ENSMUST00000082624 (Gm24620-201) 46767520-46767649 snoRNA
ENSMUSG00000084466 (Gm22960)
predicted gene, 22960 		ENSMUST00000122517 (Gm22960-201) 46902589-46902692 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RN_0001ENSG00000124789ENST00000262077ENST00000537253ENST00000613258ENSG00000137177ENST00000259711ENST00000358380ENST00000378814ENST00000378826ENST00000378843ENST00000502297ENST00000502704ENST00000503342ENST00000505588ENST00000506044ENST00000507576ENST00000514714ENSG00000201442ENST00000364572ENSG00000206881ENST00000384154ENSG00000220920ENST00000407932CIL_0003RN_0002ENSMUSG00000021374ENSMUST00000021803ENSMUST00000182156ENSMUST00000182358ENSMUST00000182914ENSMUST00000183299ENSMUSG00000021375ENSMUST00000056978ENSMUSG00000064558ENSMUST00000082624ENSMUSG00000084466ENSMUST00000122517
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RN_0001ENSG00000124789ENST00000262077ENST00000613258ENSG00000137177ENST00000259711ENST00000378814ENST00000378826ENST00000378843ENST00000502297ENSG00000201442ENST00000364572ENSG00000206881ENST00000384154ENSG00000220920ENST00000407932CIL_0003RN_0002ENSMUSG00000021374ENSMUST00000021803ENSMUST00000182914ENSMUSG00000021375ENSMUST00000056978ENSMUSG00000064558ENSMUST00000082624ENSMUSG00000084466ENSMUST00000122517
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124789 ENST00000262077 7.464±0.00 4.699±0.00 3.915±0.00 4.582±0.36 6.522±1.67 4.871±0.37 3.227±2.30 3.534±1.39 4.212±2.55 4.911±0.43 7.134±3.29 7.982±1.45 6.389±0.39 16.422±0.12
ENST00000537253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613258 N/A 1.155±0.00 N/A N/A 1.264±0.00 N/A N/A 1.122±0.00 N/A 3.297±0.00 N/A N/A N/A N/A
ENSG00000137177 ENST00000259711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.287±0.00 N/A
ENST00000358380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378814 7.916±0.00 N/A N/A 2.626±1.67 2.341±0.00 4.061±3.13 N/A 2.877±0.00 0.465±0.00 2.323±1.25 N/A 3.319±1.99 N/A 5.340±0.00
ENST00000378826 N/A 1.713±0.00 N/A 1.058±0.00 1.155±0.00 N/A N/A 0.890±0.00 0.763±0.00 1.554±0.00 N/A 1.025±0.00 0.462±0.00 N/A
ENST00000378843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.763±0.00
ENST00000502297 N/A 2.706±0.00 N/A N/A 6.889±0.00 4.902±0.00 N/A 1.547±0.00 2.075±0.00 3.582±0.00 2.757±0.00 3.444±0.05 1.390±0.01 5.677±0.00
ENST00000502704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201442 ENST00000364572 N/A N/A N/A 0.783±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206881 ENST00000384154 N/A N/A N/A N/A N/A 0.217±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000220920 ENST00000407932 0.163±0.00 0.164±0.00 1.929±0.00 0.178±0.00 0.614±0.53 N/A 0.198±0.00 1.342±0.00 N/A 0.674±0.00 N/A 1.001±0.92 N/A 0.038±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021374 ENSMUST00000021803 6.154±3.63 6.934±0.22 7.696±0.65 7.297±3.35 5.621±3.39 5.204±2.00 2.716±0.85 3.211±0.82 6.872±6.03 7.861±3.15 5.470±1.58 7.711±3.90 11.978±4.59 29.036±10.36
ENSMUST00000182156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182914 17.949±5.22 17.290±0.00 N/A N/A 24.904±5.55 16.307±2.57 7.764±1.14 10.322±2.07 6.387±0.63 23.546±5.50 N/A 35.998±5.91 N/A 72.939±2.88
ENSMUST00000183299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000021375 ENSMUST00000056978 5.787±1.90 0.549±0.00 1.748±0.75 3.934±2.13 3.121±1.78 7.014±4.15 4.643±2.21 2.315±1.11 1.029±0.44 8.514±4.78 4.864±1.60 3.412±2.05 5.895±4.91 0.942±0.39
ENSMUSG00000064558 ENSMUST00000082624 N/A N/A N/A 18.817±0.00 N/A N/A N/A N/A N/A N/A 3.611±0.00 27.916±10.34 N/A N/A
ENSMUSG00000084466 ENSMUST00000122517 N/A N/A N/A N/A N/A N/A N/A N/A 144.425±0.00 N/A N/A N/A N/A N/A

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