C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PX domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021411 Pxdc1 10090 - 13:34627840-34652681 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021847 Pxdc1-001 34627840-34652681 nonsense_mediated_decay
  ENSMUST00000053459 Pxdc1-002 34627840-34652671 protein_coding
  ENSMUST00000125037 Pxdc1-003 34627841-34652681 nonsense_mediated_decay
  ENSMUST00000152392 Pxdc1-004 34628868-34648568 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021847ENSMUST00000053459ENSMUST00000125037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021847 0.602±0.00 0.950±0.00 N/A N/A 4.585±0.00 N/A N/A 0.592±0.12 N/A N/A 0.227±0.00 0.810±0.00 N/A 0.565±0.00
ENSMUST00000053459 13.426±8.89 1.787±0.70 9.191±2.98 3.141±0.31 19.308±1.69 7.079±0.74 4.943±0.56 2.983±0.56 28.464±16.83 49.279±6.10 1.749±0.91 1.993±0.87 13.375±5.07 4.600±1.88
ENSMUST00000125037 0.685±0.00 1.741±0.71 N/A N/A 4.826±0.00 N/A 1.014±0.00 0.703±0.00 N/A N/A 0.436±0.00 1.866±0.64 N/A 0.411±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IW CIL_0003IW_0002 CGP 13:34179158-34652681
CIL_0007Y7 CIL_0007Y7_0002 VISTA 13:34527566-35128899
CIL_0003IP CIL_0003IP_0002 CGP 13:34627840-34747613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040309 pxdc1b PX domain containing 1b protein_coding Danio_rerio
ENSDARG00000055177 pxdc1a PX domain containing 1a protein_coding Danio_rerio
ENSG00000168994 PXDC1 PX domain containing 1 protein_coding Homo_sapiens

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