C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003IW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137266-ENSG00000168994 CGP 9606 6:3268962-3752026
GeneTranscriptPositionBiotype
ENSG00000168994 (PXDC1)
PX domain containing 1 		ENST00000380277 (PXDC1-003) 3722620-3738894 protein_coding
ENST00000380283 (PXDC1-001) 3722620-3752026 protein_coding
ENST00000477592 (PXDC1-002) 3722614-3751532 processed_transcript
ENST00000485986 (PXDC1-004) 3738796-3751529 processed_transcript
ENSG00000228793 (RP1-223B1.1)
 ENST00000443445 (RP1-223B1.1-001) 3594247-3624747 lincRNA
ENSG00000270504 (RP11-420L9.5)
 ENST00000603791 (RP11-420L9.5-001) 3751111-3753871 antisense
ENSG00000272320 (RP11-506K6.4)
 ENST00000607565 (RP11-506K6.4-001) 3311662-3313650 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003IW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038267-ENSMUSG00000021411 CGP 10090 13:34179158-34652681
GeneTranscriptPositionBiotype
ENSMUSG00000021411 (Pxdc1)
PX domain containing 1 		ENSMUST00000021847 (Pxdc1-001) 34627840-34652681 nonsense_mediated_decay
ENSMUST00000053459 (Pxdc1-002) 34627840-34652671 protein_coding
ENSMUST00000125037 (Pxdc1-003) 34627841-34652681 nonsense_mediated_decay
ENSMUST00000152392 (Pxdc1-004) 34628868-34648568 protein_coding
ENSMUSG00000038267 (Slc22a23)
solute carrier family 22, member 23 		ENSMUST00000040336 (Slc22a23-001) 34179158-34345182 protein_coding
ENSMUST00000128392 (Slc22a23-006) 34182867-34193531 retained_intron
ENSMUST00000143353 (Slc22a23-005) 34221370-34344203 processed_transcript
ENSMUST00000145038 (Slc22a23-004) 34204020-34344595 nonsense_mediated_decay
ENSMUST00000148390 (Slc22a23-002) 34179643-34344451 protein_coding
ENSMUSG00000088573 (Gm24530)
predicted gene, 24530 		ENSMUST00000157948 (Gm24530-201) 34276965-34277252 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IW_0001ENSG00000168994ENST00000380277ENST00000380283ENST00000477592ENST00000485986ENSG00000228793ENST00000443445ENSG00000270504ENST00000603791ENSG00000272320ENST00000607565CIL_0003IW_0002ENSMUSG00000021411ENSMUST00000021847ENSMUST00000053459ENSMUST00000125037ENSMUST00000152392ENSMUSG00000038267ENSMUST00000040336ENSMUST00000128392ENSMUST00000143353ENSMUST00000145038ENSMUST00000148390ENSMUSG00000088573ENSMUST00000157948
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IW_0001ENSG00000168994ENST00000380277ENST00000380283ENST00000477592ENSG00000228793ENST00000443445ENSG00000270504ENST00000603791ENSG00000272320ENST00000607565CIL_0003IW_0002ENSMUSG00000021411ENSMUST00000021847ENSMUST00000053459ENSMUST00000125037ENSMUSG00000038267ENSMUST00000040336ENSMUST00000128392ENSMUST00000148390ENSMUSG00000088573ENSMUST00000157948
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000168994 ENST00000380277 23.808±0.00 13.953±0.00 1.317±0.00 7.086±0.00 10.447±5.87 8.486±0.00 4.921±4.07 3.303±0.06 40.673±0.00 21.419±0.00 3.995±3.39 8.364±5.56 19.634±2.58 8.301±0.00
ENST00000380283 11.779±0.00 N/A N/A 3.500±2.37 13.093±12.18 11.115±0.00 2.249±1.86 8.534±1.69 10.020±3.77 0.830±0.00 1.657±0.52 6.083±3.58 17.936±4.99 0.827±0.00
ENST00000477592 N/A 3.742±0.00 0.841±0.00 N/A 1.205±0.00 1.662±0.00 N/A 1.997±0.16 26.196±0.00 9.334±6.77 2.137±1.82 5.320±2.24 18.366±4.03 2.557±0.27
ENST00000485986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228793 ENST00000443445 N/A 0.138±0.00 N/A 0.167±0.00 0.020±0.00 N/A 0.024±0.01 0.040±0.00 N/A 0.352±0.19 N/A 0.199±0.00 0.055±0.00 0.196±0.11
ENSG00000270504 ENST00000603791 5.934±0.00 4.010±0.00 N/A N/A 3.555±2.88 N/A 1.896±0.00 2.480±0.00 N/A 4.215±0.00 N/A 1.779±0.97 8.768±2.59 0.938±0.00
ENSG00000272320 ENST00000607565 0.169±0.00 0.133±0.00 1.144±0.00 0.527±0.16 1.737±1.63 1.936±1.74 0.098±0.07 0.863±0.65 0.475±0.46 0.937±0.88 0.103±0.00 0.630±0.80 0.042±0.03 0.079±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021411 ENSMUST00000021847 0.602±0.00 0.950±0.00 N/A N/A 4.585±0.00 N/A N/A 0.592±0.12 N/A N/A 0.227±0.00 0.810±0.00 N/A 0.565±0.00
ENSMUST00000053459 13.426±8.89 1.787±0.70 9.191±2.98 3.141±0.31 19.308±1.69 7.079±0.74 4.943±0.56 2.983±0.56 28.464±16.83 49.279±6.10 1.749±0.91 1.993±0.87 13.375±5.07 4.600±1.88
ENSMUST00000125037 0.685±0.00 1.741±0.71 N/A N/A 4.826±0.00 N/A 1.014±0.00 0.703±0.00 N/A N/A 0.436±0.00 1.866±0.64 N/A 0.411±0.00
ENSMUST00000152392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038267 ENSMUST00000040336 2.011±1.28 1.534±0.64 3.558±1.44 6.105±2.27 1.281±0.30 10.464±4.67 0.574±0.05 5.949±3.61 4.820±1.24 7.498±2.25 0.852±0.19 0.662±0.00 3.016±0.96 0.164±0.04
ENSMUST00000128392 N/A N/A N/A 17.865±0.00 N/A 39.964±0.00 N/A N/A N/A N/A N/A 4.429±1.04 18.610±0.00 2.612±0.51
ENSMUST00000143353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148390 3.389±0.62 2.276±0.33 7.456±1.57 11.031±7.36 4.394±1.22 12.999±5.53 1.987±0.30 15.591±2.64 10.837±1.65 11.208±2.91 1.747±0.38 1.725±0.97 8.869±5.23 0.437±0.34
ENSMUSG00000088573 ENSMUST00000157948 0.282±0.00 0.384±0.01 0.070±0.00 0.560±0.31 N/A 0.763±0.17 0.227±0.01 1.113±0.76 0.596±0.25 1.039±0.19 N/A 1.180±0.00 0.648±0.09 0.262±0.00

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