C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP4 pre-mRNA processing factor 4 homolog B (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021413 Prpf4b 10090 + 13:34875494-34902877 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077853 Prpf4b-201 34875494-34902877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077853
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077853 3.785±0.00 1.268±0.67 13.771±0.00 8.245±3.51 1.699±0.29 1.588±0.54 2.327±0.27 1.494±0.78 4.831±4.23 2.803±0.94 1.666±0.63 6.634±8.99 10.672±5.14 3.412±4.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y7 CIL_0007Y7_0002 VISTA 13:34527566-35128899
CIL_0003IQ CIL_0003IQ_0002 CGP 13:34734850-34902877
CIL_0003IR CIL_0003IR_0002 CGP 13:34875494-34919992

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004672 ISS protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005694 IDA chromosome
GO:0006397 IEA mRNA processing
GO:0006468 IEA protein phosphorylation
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008784 prpf4ba PRP4 pre-mRNA processing factor 4 homolog Ba protein_coding Danio_rerio
ENSDARG00000040310 prpf4bb PRP4 pre-mRNA processing factor 4 homolog Bb protein_coding Danio_rerio
ENSG00000112739 PRPF4B pre-mRNA processing factor 4B protein_coding Homo_sapiens

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