C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP4 pre-mRNA processing factor 4 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077853 Prpf4b-201 ENSMUSG00000021413 10090 + 13:34875494-34902877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077853
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077853 3.785±0.00 1.268±0.67 13.771±0.00 8.245±3.51 1.699±0.29 1.588±0.54 2.327±0.27 1.494±0.78 4.831±4.23 2.803±0.94 1.666±0.63 6.634±8.99 10.672±5.14 3.412±4.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y7 CIL_0007Y7_0002 VISTA 13:34527566-35128899
CIL_0003IQ CIL_0003IQ_0002 CGP 13:34734850-34902877
CIL_0003IR CIL_0003IR_0002 CGP 13:34875494-34919992

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 ISS protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005694 IDA chromosome
GO:0006397 IEA mRNA processing
GO:0006468 IEA protein phosphorylation
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337659 PRPF4B-011 protein_coding Homo_sapiens 0 5703
ENST00000380194 RP11-78H18.2-001 processed_pseudogene Homo_sapiens 0 2752
ENST00000432026 RP11-232D9.1-001 processed_pseudogene Homo_sapiens 0 472
ENST00000463634 PRPF4B-002 retained_intron Homo_sapiens 0 1424
ENST00000466185 PRPF4B-007 processed_transcript Homo_sapiens 0 468
ENST00000480058 PRPF4B-001 nonsense_mediated_decay Homo_sapiens 0 5736
ENST00000481109 PRPF4B-003 nonsense_mediated_decay Homo_sapiens 0 2381
ENST00000490399 PRPF4B-006 processed_transcript Homo_sapiens 0 497
ENST00000490653 PRPF4B-008 processed_transcript Homo_sapiens 0 394
ENST00000494674 PRPF4B-010 processed_transcript Homo_sapiens 0 569

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