C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003IR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000112739-ENSG00000145975 CGP 9606 6:4021267-4087344
GeneTranscriptPositionBiotype
ENSG00000112739 (PRPF4B)
pre-mRNA processing factor 4B 		ENST00000337659 (PRPF4B-011) 4021326-4061907 protein_coding
ENST00000461612 (PRPF4B-009) 4062104-4064983 processed_transcript
ENST00000463634 (PRPF4B-002) 4040849-4064983 retained_intron
ENST00000466185 (PRPF4B-007) 4051982-4058890 processed_transcript
ENST00000480058 (PRPF4B-001) 4021267-4064982 nonsense_mediated_decay
ENST00000481109 (PRPF4B-003) 4037419-4064983 nonsense_mediated_decay
ENST00000490399 (PRPF4B-006) 4040848-4044226 processed_transcript
ENST00000490653 (PRPF4B-008) 4060982-4062069 processed_transcript
ENST00000494674 (PRPF4B-010) 4057160-4063556 processed_transcript
ENSG00000145975 (FAM217A)
family with sequence similarity 217, member A 		ENST00000274673 (FAM217A-001) 4068362-4079221 protein_coding
ENST00000380188 (FAM217A-003) 4068367-4087344 processed_transcript
ENST00000463904 (FAM217A-009) 4049434-4050518 processed_transcript
ENST00000469157 (FAM217A-008) 4050461-4087332 processed_transcript
ENST00000478714 (FAM217A-005) 4073458-4079221 processed_transcript
ENST00000492651 (FAM217A-007) 4073292-4079100 protein_coding
ENST00000498677 (FAM217A-006) 4069891-4079134 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0003IR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021413-ENSMUSG00000021414 CGP 10090 13:34875494-34919992
GeneTranscriptPositionBiotype
ENSMUSG00000021413 (Prpf4b)
PRP4 pre-mRNA processing factor 4 homolog B (yeast) 		ENSMUST00000077853 (Prpf4b-201) 34875494-34902877 protein_coding
ENSMUSG00000021414 (Fam217a)
family with sequence similarity 217, member A 		ENSMUST00000021851 (Fam217a-201) 34909964-34919992 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IR_0001ENSG00000112739ENST00000337659ENST00000461612ENST00000463634ENST00000466185ENST00000480058ENST00000481109ENST00000490399ENST00000490653ENST00000494674ENSG00000145975ENST00000274673ENST00000380188ENST00000463904ENST00000469157ENST00000478714ENST00000492651ENST00000498677CIL_0003IR_0002ENSMUSG00000021413ENSMUST00000077853ENSMUSG00000021414ENSMUST00000021851
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IR_0001ENSG00000112739ENST00000337659ENST00000480058ENST00000481109ENSG00000145975ENST00000274673ENST00000380188CIL_0003IR_0002ENSMUSG00000021413ENSMUST00000077853ENSMUSG00000021414ENSMUST00000021851
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112739 ENST00000337659 4.346±0.00 4.868±0.00 3.584±0.00 3.246±2.05 3.293±0.00 4.297±0.35 2.893±1.28 4.132±1.16 3.125±1.33 4.009±0.07 1.484±1.17 4.546±1.56 3.862±0.72 6.520±1.08
ENST00000461612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480058 N/A 0.912±0.00 1.078±0.00 1.281±0.00 2.483±0.96 2.073±0.91 1.204±0.00 2.795±1.43 1.268±0.19 2.656±0.00 0.615±0.02 4.291±1.51 0.875±0.17 2.444±0.63
ENST00000481109 N/A N/A N/A 1.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.172±0.00 N/A
ENST00000490399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145975 ENST00000274673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.582±2.16
ENST00000380188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.371±0.00
ENST00000463904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021413 ENSMUST00000077853 3.785±0.00 1.268±0.67 13.771±0.00 8.245±3.51 1.699±0.29 1.588±0.54 2.327±0.27 1.494±0.78 4.831±4.23 2.803±0.94 1.666±0.63 6.634±8.99 10.672±5.14 3.412±4.30
ENSMUSG00000021414 ENSMUST00000021851 0.084±0.01 0.166±0.09 N/A 0.080±0.00 0.131±0.11 0.051±0.02 0.087±0.03 0.172±0.03 0.045±0.03 0.040±0.03 0.012±0.00 0.262±0.17 0.158±0.15 56.374±48.21

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