C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal sequence receptor, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021427 Ssr1 10090 - 13:37971401-37994190 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021864 Ssr1-201 37971401-37994190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021864 6.849±1.70 7.500±0.84 10.324±0.18 8.294±2.10 5.053±0.36 6.680±0.61 2.925±0.13 5.692±0.65 8.305±3.01 9.703±0.73 1.898±0.82 9.991±3.02 20.755±5.00 6.168±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0002 VISTA 13:37577817-38179534
CIL_0003S7 CIL_0003S7_0002 CGP 13:37778400-37994190
CIL_0007T6 CIL_0007T6_0002 VISTA 13:37870525-38472280
CIL_00004W CIL_00004W_0002 CGP 13:37971401-38037069

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040518 ssr1 signal sequence receptor, alpha protein_coding Danio_rerio
ENSG00000124783 SSR1 signal sequence receptor, alpha protein_coding Homo_sapiens

Loading