C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal sequence receptor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021864 Ssr1-201 ENSMUSG00000021427 10090 - 13:37971401-37994190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021864 6.849±1.70 7.500±0.84 10.324±0.18 8.294±2.10 5.053±0.36 6.680±0.61 2.925±0.13 5.692±0.65 8.305±3.01 9.703±0.73 1.898±0.82 9.991±3.02 20.755±5.00 6.168±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0002 VISTA 13:37577817-38179534
CIL_0003S7 CIL_0003S7_0002 CGP 13:37778400-37994190
CIL_0007T6 CIL_0007T6_0002 VISTA 13:37870525-38472280
CIL_00004W CIL_00004W_0002 CGP 13:37971401-38037069

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244763 SSR1-001 protein_coding Homo_sapiens 0 1369
ENST00000291478 KALRN-001 protein_coding Homo_sapiens 0.000001 62
ENST00000307142 SYNPO2-001 protein_coding Homo_sapiens 0.0001 55
ENST00000343933 CORO2A-001 protein_coding Homo_sapiens 0.00003 57
ENST00000360525 PIGP-001 protein_coding Homo_sapiens 0.000003 60
ENST00000369528 SIKE1-002 protein_coding Homo_sapiens 0.00000005 66
ENST00000375077 CORO2A-002 protein_coding Homo_sapiens 0.00003 57
ENST00000397511 SSR1-002 protein_coding Homo_sapiens 0 1291
ENST00000410097 METTL5-004 protein_coding Homo_sapiens 0.00002 55
ENST00000448416 SYNPO2-201 protein_coding Homo_sapiens 0.00008 55
ENST00000462112 SSR1-011 protein_coding Homo_sapiens 0 939
ENST00000464265 PIGP-004 protein_coding Homo_sapiens 0.000001 60
ENST00000474597 SSR1-003 protein_coding Homo_sapiens 0 1107
ENST00000479365 SSR1-007 protein_coding Homo_sapiens 0 1251
ENST00000479485 SSR1-010 protein_coding Homo_sapiens 0 453
ENST00000483409 SSR1-009 processed_transcript Homo_sapiens 0 616
ENST00000488834 SSR1-008 processed_transcript Homo_sapiens 0 568
ENST00000489567 SSR1-006 protein_coding Homo_sapiens 0 721
ENST00000504178 SYNPO2-004 protein_coding Homo_sapiens 0.0001 55
ENST00000610556 SYNPO2-202 protein_coding Homo_sapiens 0.0001 55

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