C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal sequence receptor, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124783 SSR1 9606 - 6:7268306-7347446 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000244763 SSR1-001 7281143-7313207 protein_coding
  ENST00000397511 SSR1-002 7287570-7313198 protein_coding
  ENST00000462112 SSR1-011 7296883-7313188 protein_coding
  ENST00000474597 SSR1-003 7268306-7313207 protein_coding
  ENST00000475213 SSR1-012 7268938-7289850 processed_transcript
  ENST00000479365 SSR1-007 7289676-7313182 protein_coding
  ENST00000479485 SSR1-010 7295056-7301363 protein_coding
  ENST00000483409 SSR1-009 7301390-7313231 processed_transcript
  ENST00000488834 SSR1-008 7301333-7347446 processed_transcript
  ENST00000489567 SSR1-006 7288682-7313174 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000244763ENST00000397511ENST00000462112ENST00000479365
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000244763 5.198±0.00 7.181±0.00 2.690±0.00 4.868±1.78 4.452±0.30 3.856±0.60 1.980±0.48 5.778±1.72 5.897±2.20 3.846±0.41 1.913±0.00 5.182±2.24 N/A 6.586±0.00
ENST00000397511 17.566±0.00 12.415±0.00 4.928±0.00 7.608±0.00 12.673±7.49 10.106±1.72 6.338±3.75 16.776±3.79 12.891±4.04 12.897±3.91 3.129±2.09 15.142±3.69 17.244±1.65 17.859±0.00
ENST00000462112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.361±0.00 55.100±0.00 78.940±0.00
ENST00000479365 27.163±0.00 N/A N/A N/A 26.575±0.00 15.920±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0001 VISTA 6:6863717-7465821
CIL_0003S7 CIL_0003S7_0001 CGP 6:7107597-7347446
CIL_0007T6 CIL_0007T6_0001 VISTA 6:7260927-7862502
CIL_00004W CIL_00004W_0001 CGP 6:7268306-7389743

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS:IEA endoplasmic reticulum membrane
GO:0006412 TAS translation
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0008284 TAS positive regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0016021 IEA integral component of membrane
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040518 ssr1 signal sequence receptor, alpha protein_coding Danio_rerio
ENSMUSG00000021427 Ssr1 signal sequence receptor, alpha protein_coding Mus_musculus

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