C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021494 Ddx41 10090 - 13:55530410-55536658 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021956 Ddx41-201 55530410-55536658 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021956
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021956 20.947±4.21 22.163±2.07 18.870±2.44 29.875±6.23 21.130±5.36 22.462±1.39 6.243±0.86 28.269±1.11 18.859±5.80 22.920±0.60 3.327±0.60 36.236±7.48 25.034±9.02 22.397±4.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0000XC CIL_0000XC_0003 CGP 13:55523235-55536658
CIL_0002YP CIL_0002YP_0002 CGP 13:55530410-55571120

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0035458 IMP cellular response to interferon-beta
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051607 IMP defense response to virus
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042269 ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 protein_coding Danio_rerio
ENSG00000183258 DDX41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 protein_coding Homo_sapiens

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