C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021956 Ddx41-201 ENSMUSG00000021494 10090 - 13:55530410-55536658 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021956
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021956 20.947±4.21 22.163±2.07 18.870±2.44 29.875±6.23 21.130±5.36 22.462±1.39 6.243±0.86 28.269±1.11 18.859±5.80 22.920±0.60 3.327±0.60 36.236±7.48 25.034±9.02 22.397±4.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0000XC CIL_0000XC_0003 CGP 13:55523235-55536658
CIL_0002YP CIL_0002YP_0002 CGP 13:55530410-55571120

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0035458 IMP cellular response to interferon-beta
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051607 IMP defense response to virus
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000061987 ddx41-201 protein_coding Danio_rerio 0 894
ENSDART00000126309 CABZ01074913.1-201 protein_coding Danio_rerio 0 226
ENST00000330503 DDX41-004 protein_coding Homo_sapiens 0 2346
ENST00000503078 DDX41-003 retained_intron Homo_sapiens 0 2217
ENST00000504781 DDX41-010 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000504807 DDX41-018 retained_intron Homo_sapiens 0 688
ENST00000505081 DDX41-006 retained_intron Homo_sapiens 0 989
ENST00000506965 DDX41-017 processed_transcript Homo_sapiens 0 547
ENST00000507900 DDX41-007 retained_intron Homo_sapiens 0 1663
ENST00000507955 DDX41-001 protein_coding Homo_sapiens 0 2390
ENST00000508279 DDX41-013 nonsense_mediated_decay Homo_sapiens 0 538
ENST00000509576 DDX41-009 nonsense_mediated_decay Homo_sapiens 0 717
ENST00000510171 DDX41-008 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000511040 DDX41-011 retained_intron Homo_sapiens 0 739
ENST00000512027 DDX41-014 retained_intron Homo_sapiens 0 320
ENST00000512334 DDX41-015 retained_intron Homo_sapiens 0 420
ENST00000512431 DDX41-016 retained_intron Homo_sapiens 0 477
ENST00000513562 DDX41-012 retained_intron Homo_sapiens 0 499
ENST00000515562 DDX41-005 retained_intron Homo_sapiens 0 460

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