C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000XC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000086910-ENSDARG00000042269 CGP 7955 14:51981054-52017120
GeneTranscriptPositionBiotype
ENSDARG00000042269 (ddx41)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 		ENSDART00000061987 (ddx41-201) 52000144-52017120 protein_coding
ENSDART00000130634 (ddx41-202) 52014187-52017120 protein_coding
ENSDARG00000086910 (CABZ01072950.1)
Uncharacterized protein 		ENSDART00000127221 (CABZ01072950.1-201) 51981054-51997702 protein_coding
CIL_0000XC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000146094-ENSG00000183258 CGP 9606 5:177501907-177517469
GeneTranscriptPositionBiotype
ENSG00000146094 (DOK3)
docking protein 3 		ENST00000312943 (DOK3-002) 177501907-177510385 protein_coding
ENST00000357198 (DOK3-001) 177503750-177509857 protein_coding
ENST00000377112 (DOK3-005) 177502088-177510382 protein_coding
ENST00000500323 (DOK3-006) 177502088-177508877 retained_intron
ENST00000501403 (DOK3-003) 177503784-177510382 protein_coding
ENST00000502380 (DOK3-004) 177508784-177510382 retained_intron
ENST00000502885 (DOK3-012) 177505051-177509826 protein_coding
ENST00000506493 (DOK3-010) 177505013-177509829 protein_coding
ENST00000509310 (DOK3-007) 177508478-177511274 protein_coding
ENST00000510380 (DOK3-011) 177504747-177509846 protein_coding
ENST00000510389 (DOK3-008) 177509502-177511267 protein_coding
ENST00000510898 (DOK3-009) 177508354-177509852 protein_coding
ENST00000512660 (DOK3-013) 177509166-177509826 retained_intron
ENSG00000183258 (DDX41)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 		ENST00000330503 (DDX41-004) 177511577-177516916 protein_coding
ENST00000503078 (DDX41-003) 177511578-177516961 retained_intron
ENST00000504781 (DDX41-010) 177514938-177516324 nonsense_mediated_decay
ENST00000504807 (DDX41-018) 177512496-177514746 retained_intron
ENST00000505081 (DDX41-006) 177511578-177516950 retained_intron
ENST00000506965 (DDX41-017) 177515022-177516950 processed_transcript
ENST00000507900 (DDX41-007) 177511600-177515333 retained_intron
ENST00000507955 (DDX41-001) 177511577-177517469 protein_coding
ENST00000508279 (DDX41-013) 177513399-177515731 nonsense_mediated_decay
ENST00000509576 (DDX41-009) 177514981-177516950 nonsense_mediated_decay
ENST00000510171 (DDX41-008) 177515772-177516961 nonsense_mediated_decay
ENST00000511040 (DDX41-011) 177513072-177515353 retained_intron
ENST00000512027 (DDX41-014) 177513002-177513784 retained_intron
ENST00000512334 (DDX41-015) 177511577-177512545 retained_intron
ENST00000512431 (DDX41-016) 177514929-177516935 retained_intron
ENST00000513562 (DDX41-012) 177513435-177515039 retained_intron
ENST00000515562 (DDX41-005) 177515341-177516895 retained_intron
ENSG00000248996 (RP11-1334A24.6)
 ENST00000506025 (RP11-1334A24.6-001) 177494995-177503647 antisense
CIL_0000XC_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035711-ENSMUSG00000021494 CGP 10090 13:55523235-55536658
GeneTranscriptPositionBiotype
ENSMUSG00000021494 (Ddx41)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 		ENSMUST00000021956 (Ddx41-201) 55530410-55536658 protein_coding
ENSMUSG00000035711 (Dok3)
docking protein 3 		ENSMUST00000047877 (Dok3-201) 55523235-55528538 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XC_0001ENSDARG00000042269ENSDART00000061987ENSDART00000130634ENSDARG00000086910ENSDART00000127221CIL_0000XC_0002ENSG00000146094ENST00000312943ENST00000357198ENST00000377112ENST00000500323ENST00000501403ENST00000502380ENST00000502885ENST00000506493ENST00000509310ENST00000510380ENST00000510389ENST00000510898ENST00000512660ENSG00000183258ENST00000330503ENST00000503078ENST00000504781ENST00000504807ENST00000505081ENST00000506965ENST00000507900ENST00000507955ENST00000508279ENST00000509576ENST00000510171ENST00000511040ENST00000512027ENST00000512334ENST00000512431ENST00000513562ENST00000515562ENSG00000248996ENST00000506025CIL_0000XC_0003ENSMUSG00000021494ENSMUST00000021956ENSMUSG00000035711ENSMUST00000047877
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XC_0001ENSDARG00000042269ENSDART00000061987ENSDART00000130634ENSDARG00000086910ENSDART00000127221CIL_0000XC_0002ENSG00000146094ENST00000312943ENST00000357198ENST00000377112ENST00000500323ENST00000502380ENST00000502885ENST00000510389ENST00000510898ENSG00000183258ENST00000330503ENST00000503078ENST00000505081ENST00000506965ENST00000507900ENST00000507955ENST00000509576ENST00000510171ENST00000511040ENST00000512334ENST00000515562ENSG00000248996ENST00000506025CIL_0000XC_0003ENSMUSG00000021494ENSMUST00000021956ENSMUSG00000035711ENSMUST00000047877
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042269 ENSDART00000061987 N/A N/A N/A 7.072±6.97 N/A N/A N/A 7.493±0.00 0.611±0.00 N/A N/A N/A N/A N/A
ENSDART00000130634 N/A N/A N/A 4.837±0.00 N/A N/A N/A 25.067±0.00 1.057±0.00 N/A N/A N/A N/A N/A
ENSDARG00000086910 ENSDART00000127221 N/A N/A N/A 0.171±0.00 N/A N/A 0.357±0.00 N/A 0.057±0.00 N/A 0.097±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146094 ENST00000312943 N/A 13.940±0.00 N/A N/A N/A 0.447±0.00 N/A N/A N/A N/A 0.038±0.00 1.994±0.00 N/A 1.149±0.00
ENST00000357198 1.370±0.00 9.251±0.00 N/A N/A N/A N/A 0.336±0.00 N/A 0.262±0.00 N/A 0.155±0.00 1.329±0.00 N/A 1.067±0.00
ENST00000377112 N/A N/A N/A 0.683±0.00 N/A N/A 0.454±0.00 0.488±0.00 N/A N/A 0.582±0.00 N/A N/A N/A
ENST00000500323 N/A 5.952±0.00 N/A N/A 0.212±0.00 N/A 0.174±0.06 N/A 0.154±0.00 1.775±0.00 N/A 0.174±0.00 N/A 0.522±0.00
ENST00000501403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502380 N/A N/A N/A 0.204±0.00 N/A N/A N/A 0.273±0.00 N/A N/A N/A 0.254±0.00 N/A N/A
ENST00000502885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.420±0.00 N/A N/A
ENST00000506493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510389 N/A N/A N/A 0.295±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510898 N/A N/A N/A N/A N/A N/A N/A 0.627±0.00 1.399±0.00 1.599±0.00 N/A 1.094±0.00 N/A N/A
ENST00000512660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183258 ENST00000330503 18.656±0.00 15.151±0.00 N/A 15.207±13.88 7.307±6.17 8.019±6.51 3.099±2.91 10.528±8.80 7.516±5.49 6.010±4.54 13.465±0.00 17.298±12.14 31.498±4.08 25.953±0.00
ENST00000503078 N/A 9.228±0.00 N/A 1.024±0.00 2.636±2.16 3.307±0.00 1.350±0.00 1.071±0.00 N/A N/A N/A 4.065±0.00 N/A N/A
ENST00000504781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505081 N/A N/A 0.400±0.00 N/A 0.342±0.00 0.547±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.699±0.00 N/A N/A N/A
ENST00000507900 N/A 12.955±0.00 N/A N/A N/A N/A N/A 6.298±0.00 N/A 4.801±0.00 N/A 14.254±3.40 17.221±0.00 21.052±0.00
ENST00000507955 N/A N/A 0.523±0.00 3.888±0.00 0.500±0.00 N/A 0.433±0.00 N/A N/A 1.455±0.00 N/A 5.376±3.12 13.019±0.00 12.294±0.00
ENST00000508279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509576 N/A N/A N/A N/A 1.896±0.00 4.102±0.00 N/A N/A N/A 3.490±0.00 N/A N/A N/A N/A
ENST00000510171 N/A N/A 1.864±0.00 4.783±0.00 N/A N/A N/A 2.829±0.00 2.351±0.00 N/A 7.064±0.00 N/A N/A 32.481±0.00
ENST00000511040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.405±0.00 N/A N/A N/A
ENST00000512027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.231±0.00 N/A N/A N/A
ENST00000512431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515562 N/A N/A N/A N/A N/A N/A N/A N/A 1.007±0.00 N/A N/A N/A N/A N/A
ENSG00000248996 ENST00000506025 N/A N/A N/A N/A 1.182±0.00 N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021494 ENSMUST00000021956 20.947±4.21 22.163±2.07 18.870±2.44 29.875±6.23 21.130±5.36 22.462±1.39 6.243±0.86 28.269±1.11 18.859±5.80 22.920±0.60 3.327±0.60 36.236±7.48 25.034±9.02 22.397±4.33
ENSMUSG00000035711 ENSMUST00000047877 4.334±1.21 5.479±0.35 3.011±0.66 5.012±1.90 38.647±15.54 5.924±1.44 2.026±1.22 2.173±0.42 4.364±4.08 13.917±0.70 1.023±0.84 3.436±1.35 1.120±0.44 0.591±0.15

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