C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183258 DDX41 9606 - 5:177511577-177517469 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330503 DDX41-004 177511577-177516916 protein_coding
  ENST00000503078 DDX41-003 177511578-177516961 retained_intron
  ENST00000504781 DDX41-010 177514938-177516324 nonsense_mediated_decay
  ENST00000504807 DDX41-018 177512496-177514746 retained_intron
  ENST00000505081 DDX41-006 177511578-177516950 retained_intron
  ENST00000506965 DDX41-017 177515022-177516950 processed_transcript
  ENST00000507900 DDX41-007 177511600-177515333 retained_intron
  ENST00000507955 DDX41-001 177511577-177517469 protein_coding
  ENST00000508279 DDX41-013 177513399-177515731 nonsense_mediated_decay
  ENST00000509576 DDX41-009 177514981-177516950 nonsense_mediated_decay
  ENST00000510171 DDX41-008 177515772-177516961 nonsense_mediated_decay
  ENST00000511040 DDX41-011 177513072-177515353 retained_intron
  ENST00000512027 DDX41-014 177513002-177513784 retained_intron
  ENST00000512334 DDX41-015 177511577-177512545 retained_intron
  ENST00000512431 DDX41-016 177514929-177516935 retained_intron
  ENST00000513562 DDX41-012 177513435-177515039 retained_intron
  ENST00000515562 DDX41-005 177515341-177516895 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330503ENST00000503078ENST00000505081ENST00000506965ENST00000507900ENST00000507955ENST00000509576ENST00000510171ENST00000511040ENST00000512334ENST00000515562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330503 18.656±0.00 15.151±0.00 N/A 15.207±13.88 7.307±6.17 8.019±6.51 3.099±2.91 10.528±8.80 7.516±5.49 6.010±4.54 13.465±0.00 17.298±12.14 31.498±4.08 25.953±0.00
ENST00000503078 N/A 9.228±0.00 N/A 1.024±0.00 2.636±2.16 3.307±0.00 1.350±0.00 1.071±0.00 N/A N/A N/A 4.065±0.00 N/A N/A
ENST00000505081 N/A N/A 0.400±0.00 N/A 0.342±0.00 0.547±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.699±0.00 N/A N/A N/A
ENST00000507900 N/A 12.955±0.00 N/A N/A N/A N/A N/A 6.298±0.00 N/A 4.801±0.00 N/A 14.254±3.40 17.221±0.00 21.052±0.00
ENST00000507955 N/A N/A 0.523±0.00 3.888±0.00 0.500±0.00 N/A 0.433±0.00 N/A N/A 1.455±0.00 N/A 5.376±3.12 13.019±0.00 12.294±0.00
ENST00000509576 N/A N/A N/A N/A 1.896±0.00 4.102±0.00 N/A N/A N/A 3.490±0.00 N/A N/A N/A N/A
ENST00000510171 N/A N/A 1.864±0.00 4.783±0.00 N/A N/A N/A 2.829±0.00 2.351±0.00 N/A 7.064±0.00 N/A N/A 32.481±0.00
ENST00000511040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.405±0.00 N/A N/A N/A
ENST00000512334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.231±0.00 N/A N/A N/A
ENST00000515562 N/A N/A N/A N/A N/A N/A N/A N/A 1.007±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0000XC CIL_0000XC_0002 CGP 5:177501907-177517469
CIL_0002YP CIL_0002YP_0001 CGP 5:177511577-177554541

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005829 TAS cytosol
GO:0006396 TAS RNA processing
GO:0006915 TAS apoptotic process
GO:0007275 TAS multicellular organismal development
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0032479 TAS regulation of type I interferon production
GO:0032481 TAS positive regulation of type I interferon production
GO:0035458 IEA cellular response to interferon-beta
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051607 IEA defense response to virus
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042269 ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 protein_coding Danio_rerio
ENSMUSG00000021494 Ddx41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 protein_coding Mus_musculus

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