C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002YP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183258-ENSG00000146067 CGP 9606 5:177511577-177554541
GeneTranscriptPositionBiotype
ENSG00000183258 (DDX41)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 		ENST00000330503 (DDX41-004) 177511577-177516916 protein_coding
ENST00000503078 (DDX41-003) 177511578-177516961 retained_intron
ENST00000504781 (DDX41-010) 177514938-177516324 nonsense_mediated_decay
ENST00000504807 (DDX41-018) 177512496-177514746 retained_intron
ENST00000505081 (DDX41-006) 177511578-177516950 retained_intron
ENST00000506965 (DDX41-017) 177515022-177516950 processed_transcript
ENST00000507900 (DDX41-007) 177511600-177515333 retained_intron
ENST00000507955 (DDX41-001) 177511577-177517469 protein_coding
ENST00000508279 (DDX41-013) 177513399-177515731 nonsense_mediated_decay
ENST00000509576 (DDX41-009) 177514981-177516950 nonsense_mediated_decay
ENST00000510171 (DDX41-008) 177515772-177516961 nonsense_mediated_decay
ENST00000511040 (DDX41-011) 177513072-177515353 retained_intron
ENST00000512027 (DDX41-014) 177513002-177513784 retained_intron
ENST00000512334 (DDX41-015) 177511577-177512545 retained_intron
ENST00000512431 (DDX41-016) 177514929-177516935 retained_intron
ENST00000513562 (DDX41-012) 177513435-177515039 retained_intron
ENST00000515562 (DDX41-005) 177515341-177516895 retained_intron
CIL_0002YP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021494-ENSMUSG00000021495 CGP 10090 13:55530410-55571120
GeneTranscriptPositionBiotype
ENSMUSG00000021494 (Ddx41)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 		ENSMUST00000021956 (Ddx41-201) 55530410-55536658 protein_coding
ENSMUSG00000021495 (Fam193b)
family with sequence similarity 193, member B 		ENSMUST00000021957 (Fam193b-201) 55539319-55571120 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002YP_0001ENSG00000183258ENST00000330503ENST00000503078ENST00000504781ENST00000504807ENST00000505081ENST00000506965ENST00000507900ENST00000507955ENST00000508279ENST00000509576ENST00000510171ENST00000511040ENST00000512027ENST00000512334ENST00000512431ENST00000513562ENST00000515562CIL_0002YP_0002ENSMUSG00000021494ENSMUST00000021956ENSMUSG00000021495ENSMUST00000021957
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002YP_0001ENSG00000183258ENST00000330503ENST00000503078ENST00000505081ENST00000506965ENST00000507900ENST00000507955ENST00000509576ENST00000510171ENST00000511040ENST00000512334ENST00000515562CIL_0002YP_0002ENSMUSG00000021494ENSMUST00000021956ENSMUSG00000021495ENSMUST00000021957
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183258 ENST00000330503 18.656±0.00 15.151±0.00 N/A 15.207±13.88 7.307±6.17 8.019±6.51 3.099±2.91 10.528±8.80 7.516±5.49 6.010±4.54 13.465±0.00 17.298±12.14 31.498±4.08 25.953±0.00
ENST00000503078 N/A 9.228±0.00 N/A 1.024±0.00 2.636±2.16 3.307±0.00 1.350±0.00 1.071±0.00 N/A N/A N/A 4.065±0.00 N/A N/A
ENST00000504781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505081 N/A N/A 0.400±0.00 N/A 0.342±0.00 0.547±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.699±0.00 N/A N/A N/A
ENST00000507900 N/A 12.955±0.00 N/A N/A N/A N/A N/A 6.298±0.00 N/A 4.801±0.00 N/A 14.254±3.40 17.221±0.00 21.052±0.00
ENST00000507955 N/A N/A 0.523±0.00 3.888±0.00 0.500±0.00 N/A 0.433±0.00 N/A N/A 1.455±0.00 N/A 5.376±3.12 13.019±0.00 12.294±0.00
ENST00000508279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509576 N/A N/A N/A N/A 1.896±0.00 4.102±0.00 N/A N/A N/A 3.490±0.00 N/A N/A N/A N/A
ENST00000510171 N/A N/A 1.864±0.00 4.783±0.00 N/A N/A N/A 2.829±0.00 2.351±0.00 N/A 7.064±0.00 N/A N/A 32.481±0.00
ENST00000511040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.405±0.00 N/A N/A N/A
ENST00000512027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.231±0.00 N/A N/A N/A
ENST00000512431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515562 N/A N/A N/A N/A N/A N/A N/A N/A 1.007±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021494 ENSMUST00000021956 20.947±4.21 22.163±2.07 18.870±2.44 29.875±6.23 21.130±5.36 22.462±1.39 6.243±0.86 28.269±1.11 18.859±5.80 22.920±0.60 3.327±0.60 36.236±7.48 25.034±9.02 22.397±4.33
ENSMUSG00000021495 ENSMUST00000021957 14.877±2.75 21.415±10.92 22.635±5.20 32.707±5.62 23.790±3.71 19.105±2.26 5.563±1.58 17.229±3.91 9.378±4.17 16.221±2.73 2.825±1.16 23.672±6.13 5.710±0.93 4.764±1.80

Loading