C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021500 Ddx46 10090 + 13:55635027-55681256 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000099479 Ddx46-201 55635027-55681256 protein_coding
  ENSMUST00000172272 Ddx46-202 55635027-55681256 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099479ENSMUST00000172272
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099479 N/A 7.876±1.48 N/A N/A N/A 1.070±0.00 N/A N/A N/A N/A N/A N/A N/A 31.964±0.00
ENSMUST00000172272 7.593±3.59 11.811±1.95 11.142±0.65 9.961±3.14 9.293±4.07 6.238±1.96 4.729±0.21 7.565±1.35 8.034±5.30 7.449±1.32 6.580±0.54 11.060±2.52 11.842±5.49 23.741±15.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0005XR CIL_0005XR_0002 CGP 13:55623005-55681256
CIL_0005XQ CIL_0005XQ_0002 CGP 13:55635027-55703499

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008152 IEA metabolic process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000094863 ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 protein_coding Danio_rerio
ENSG00000145833 DDX46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 protein_coding Homo_sapiens

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