C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099479 Ddx46-201 ENSMUSG00000021500 10090 + 13:55635027-55681256 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonTestisENSMUST00000099479
Transcript ID Adrenal Colon Testis
ENSMUST00000099479 7.876±1.48 1.070±0.00 31.964±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0005XR CIL_0005XR_0002 CGP 13:55623005-55681256
CIL_0005XQ CIL_0005XQ_0002 CGP 13:55635027-55703499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0008152 IEA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099278 sec24a-201 protein_coding Danio_rerio 0 531
ENSDART00000099265 ddx46-003 protein_coding Danio_rerio 0 531
ENSDART00000155343 ddx46-001 protein_coding Danio_rerio 0 531
ENSDART00000156233 ddx46-005 retained_intron Danio_rerio 4e-39 169
ENST00000354283 DDX46-002 protein_coding Homo_sapiens 0 3650
ENST00000452510 DDX46-001 protein_coding Homo_sapiens 0 3668
ENST00000503946 DDX46-003 retained_intron Homo_sapiens 0 856
ENST00000505592 DDX46-010 retained_intron Homo_sapiens 0 464
ENST00000507392 DDX46-005 nonsense_mediated_decay Homo_sapiens 0 1810
ENST00000509178 DDX46-011 processed_transcript Homo_sapiens 0 798
ENST00000513592 DDX46-009 nonsense_mediated_decay Homo_sapiens 0 593

Loading